Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00171
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    23   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 SSVDEKQPDEETTRGSSQPTEAEK 437
           SS +E+QP  +    SS+P + +K
Sbjct: 11  SSAEEQQPSGDILSPSSEPLDNDK 34


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 SSVDEKQPDEETTRGSSQPTEAEK 437
           SS +E+QP  +    SS+P + +K
Sbjct: 11  SSAEEQQPSGDILSPSSEPLDNDK 34


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 427 SVGCELPRVVSSSGCFSST 371
           ++G E PRV+ SSG  S T
Sbjct: 627 NLGLEPPRVILSSGAKSPT 645


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 427 SVGCELPRVVSSSGCFSST 371
           ++G E PRV+ SSG  S T
Sbjct: 627 NLGLEPPRVILSSGAKSPT 645


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 427 SVGCELPRVVSSSGCFSST 371
           ++G E PRV+ SSG  S T
Sbjct: 627 NLGLEPPRVILSSGAKSPT 645


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 473 DFAAWPFDFADRLLGFG 423
           DF++WP+D     + FG
Sbjct: 172 DFSSWPYDTHRCRINFG 188


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 7   SSEHTNDNGSY 39
           SS HTND G Y
Sbjct: 459 SSTHTNDGGLY 469


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 233 EMHAGFIRPPETNSSGRRTNCNTT 304
           EM   FI+   +N  G   +CN T
Sbjct: 183 EMSVDFIKGSISNIDGAEDHCNKT 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,200
Number of Sequences: 438
Number of extensions: 2121
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)