Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00171
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21370.2 68414.m02674 expressed protein                             30   1.9  
At1g21370.1 68414.m02673 expressed protein                             30   1.9  
At5g01280.1 68418.m00037 expressed protein                             29   3.2  
At1g62855.1 68414.m07097 expressed protein                             28   7.5  

>At1g21370.2 68414.m02674 expressed protein
          Length = 342

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 138 GGTYFVSRTLGNSFSDFVTR*VSRLSDIFKAAPIAAIIVCM 16
           GGT   SR    SFS  +    +RL  +FK  P+   +VC+
Sbjct: 26  GGTIRKSRKPKTSFSKMIKSLGNRLHHMFKLHPVLVFVVCV 66


>At1g21370.1 68414.m02673 expressed protein
          Length = 342

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 138 GGTYFVSRTLGNSFSDFVTR*VSRLSDIFKAAPIAAIIVCM 16
           GGT   SR    SFS  +    +RL  +FK  P+   +VC+
Sbjct: 26  GGTIRKSRKPKTSFSKMIKSLGNRLHHMFKLHPVLVFVVCV 66


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 270 TALGGARIVTQLKR-KLRSVQKSTEPNAAPTQQSSVDEKQPDEETTRGSSQPTEA 431
           T+L  +  V+ ++R    S  +ST     PT++S    K+P   T+R +S  T A
Sbjct: 71  TSLHSSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATSTTTRA 125


>At1g62855.1 68414.m07097 expressed protein
          Length = 116

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
 Frame = +2

Query: 29  MAAMGAALNMSLN------LLTYLVTKS-EKLFPNVRLTKYVPPLHS----LPADFPDSA 175
           MAA+    NM L       LL +  +KS + L P +RLT  + P+HS    +      S 
Sbjct: 1   MAAIRTMTNMILREFIHHPLLLHSSSKSCQSLLPCLRLTPLISPIHSNSRLVSVRCAAST 60

Query: 176 AEMSAELRKQESLLSQIHAEMH 241
           +  S   RK  S LSQ+   +H
Sbjct: 61  SGGSGGDRKVSSRLSQVQQMLH 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,836,911
Number of Sequences: 28952
Number of extensions: 167542
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)