Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00170
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 146 1e-35
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 32 0.37
08_02_0816 - 21499417-21499627,21502965-21503317,21505461-215056... 31 0.85
02_05_0237 + 27095817-27097433 30 2.0
09_04_0138 - 15021764-15021953,15023112-15023464,15023878-150240... 29 2.6
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.4
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.5
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 29 4.5
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 4.5
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 29 4.5
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 4.5
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 28 6.0
02_05_1127 + 34292894-34293284,34293948-34295443 28 6.0
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 7.9
08_01_0346 - 3063440-3064189 28 7.9
05_03_0033 - 7585267-7586028 28 7.9
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 7.9
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 146 bits (355), Expect = 1e-35
Identities = 70/82 (85%), Positives = 74/82 (90%)
Frame = +2
Query: 260 VELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLR 439
VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR
Sbjct: 86 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR 145
Query: 440 GQRAKSMKFVDGLMIHSGDPCN 505
QRAKSMKF DG MI SG P N
Sbjct: 146 AQRAKSMKFKDGYMISSGYPVN 167
Score = 142 bits (344), Expect = 2e-34
Identities = 70/78 (89%), Positives = 73/78 (93%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 204 RIRELTSVVQKRFNIPEN 257
RIRELTSVVQKRFN PEN
Sbjct: 67 RIRELTSVVQKRFNFPEN 84
Score = 78.2 bits (184), Expect = 6e-15
Identities = 34/54 (62%), Positives = 41/54 (75%)
Frame = +1
Query: 496 PLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKSGPKKPQPDHILVTEPKDE 657
P+ Y+++A RHVLLRQGVLGIKVKIML WD +GK GP P PD + + PKDE
Sbjct: 165 PVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDE 218
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 534 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNGAQGRARA 665
A +T S R G++ + P R+E + T RP PG+ + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>08_02_0816 -
21499417-21499627,21502965-21503317,21505461-21505649,
21505819-21505973,21506026-21506245
Length = 375
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 386 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESR 565
++E RG E V++ + + F + + DP ++ + C+SD +Y +
Sbjct: 128 MVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLDYCKET 187
Query: 566 SKSCCRGTSKARAA 607
C G + A A
Sbjct: 188 RNWYCYGKAVAEQA 201
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 659 GSSLGSVTRMWSGCGFFGPLLPCWSHGNMILTLIPS 552
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>09_04_0138 -
15021764-15021953,15023112-15023464,15023878-15024066,
15024171-15024299,15024469-15024642
Length = 344
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = +2
Query: 386 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESR 565
++E RG E V+ + + F + + DP ++ + C+SD E+ +
Sbjct: 104 MVEPAVRGTEYVIKAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLEFCKKT 163
Query: 566 SKSCCRGTSKA 598
C G + A
Sbjct: 164 KNWYCYGKAVA 174
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 464 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 360
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 85 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 189
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 644 SVTRMWSGCGFFGPLLPCWSH 582
S T M S CGF G + CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 544 QGVLGIKVKIMLPWDQQGKSGPKKPQPDHILVTEPKDEPVPLEPTS 681
Q VL I+ K ++ S P P P +EP+ EP P++ S
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVS 328
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 534 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNGAQGRARAP 668
A + R+TRN G A + RP + T + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 149 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 48
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 597 QERPEEATTRPHPGNGAQGRARAPR 671
Q R + +T RP PG ++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 528 TCASQTRSTRNQGQNHVAVG--PARQERPEEATTRPHPGNGAQGRARAPRADQR 683
TC++ T + ++ +A P R P T R HP + A A R ++R
Sbjct: 26 TCSAATSRSASRSSRPLAPSRAPGRPRHPPRPTRRAHPASPRASWAEAARLERR 79
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 509 YHCKGLQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 399
Y + +QSG+ LIWH+ + C+I+ H H
Sbjct: 748 YWSEIIQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 314 AESLRYKLIGGLAVRRACYGVLR 382
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_03_0033 - 7585267-7586028
Length = 253
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 592 QGKSGPK-KPQPDHILVTEPKDEPVPLEPTSE 684
+ KS PK +P+P L EPK EP EP SE
Sbjct: 128 EAKSEPKSEPKPKSELYAEPKSEP-KSEPQSE 158
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 607 PKKPQPDHILVTEPKDEPVPLEPTS 681
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,755
Number of Sequences: 37544
Number of extensions: 460330
Number of successful extensions: 1671
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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