Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00170
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 149 2e-36
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 146 2e-35
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 146 2e-35
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 33 0.18
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 33 0.18
At5g66850.1 68418.m08428 protein kinase family protein contains ... 30 1.2
At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR... 29 2.9
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 29 3.8
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 3.8
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i... 29 3.8
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 6.6
At1g27430.1 68414.m03343 GYF domain-containing protein contains ... 28 6.6
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 6.6
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 8.8
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 149 bits (360), Expect = 2e-36
Identities = 69/86 (80%), Positives = 77/86 (89%)
Frame = +2
Query: 251 RESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 430
++SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSG
Sbjct: 81 QDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 140
Query: 431 KLRGQRAKSMKFVDGLMIHSGDPCND 508
KLR RAKSMKF DG M+ SG P +
Sbjct: 141 KLRAARAKSMKFKDGYMVSSGQPTKE 166
Score = 135 bits (327), Expect = 2e-32
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 204 RIRELTSVVQKRFNIPEN 257
RIRELTS+VQKRF P++
Sbjct: 65 RIRELTSLVQKRFKFPQD 82
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = +1
Query: 493 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKSGPKKPQPDHILVTEPKDEPVPLE 672
+P + Y++ A RHVLLRQGVLG+KVKIML WD +GK GP P PD +++ PK++ V +
Sbjct: 162 QPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIA 221
Query: 673 P 675
P
Sbjct: 222 P 222
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 146 bits (353), Expect = 2e-35
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 433
+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGK
Sbjct: 82 DSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGK 141
Query: 434 LRGQRAKSMKFVDGLMIHSGDPCND 508
LR RAKSMKF DG M+ SG P +
Sbjct: 142 LRAARAKSMKFKDGYMVSSGQPTKE 166
Score = 134 bits (324), Expect = 5e-32
Identities = 66/76 (86%), Positives = 70/76 (92%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 204 RIRELTSVVQKRFNIP 251
RIRELTS+VQKRF P
Sbjct: 65 RIRELTSLVQKRFKFP 80
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +1
Query: 493 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKSGPKKPQPDHILVTEPKDEPVPLE 672
+P + Y+++A RHVLLRQGVLGIKVK+ML WD +G SGPK P PD +++ PK+E
Sbjct: 162 QPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYA 221
Query: 673 P 675
P
Sbjct: 222 P 222
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 146 bits (353), Expect = 2e-35
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 433
+SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGK
Sbjct: 82 DSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGK 141
Query: 434 LRGQRAKSMKFVDGLMIHSGDPCND 508
LR RAKSMKF DG M+ SG P +
Sbjct: 142 LRAARAKSMKFKDGYMVSSGQPTKE 166
Score = 134 bits (324), Expect = 5e-32
Identities = 66/76 (86%), Positives = 70/76 (92%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 204 RIRELTSVVQKRFNIP 251
RIRELTS+VQKRF P
Sbjct: 65 RIRELTSLVQKRFKFP 80
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/61 (60%), Positives = 45/61 (73%)
Frame = +1
Query: 493 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKSGPKKPQPDHILVTEPKDEPVPLE 672
+P + Y++ A RHVLLRQGVLGIKVKIML WD GKSGPK P PD +++ PKD+ V
Sbjct: 162 QPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSA 221
Query: 673 P 675
P
Sbjct: 222 P 222
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 221 SELTDSASFLSEHTLCPGGHNNDLRADGSD 132
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 221 SELTDSASFLSEHTLCPGGHNNDLRADGSD 132
SEL + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1
Query: 537 KHMSGSSVDVSLQGSPEWIMSP 472
KH++G D+SL+GSP W M+P
Sbjct: 495 KHLTGQRADLSLKGSPYW-MAP 515
>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 997
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 230 TEAIQHSRESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 376
T+AI+ SR S+ L ++ A+ G C E L+ K G V YGV
Sbjct: 61 TQAIRESRISIVLLSKNYASSGWCLDELLEILKCKDDMGQIVMTVFYGV 109
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 221 SELTDSASFLSEHTLCPGGHNNDLRADGSD 132
+EL + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 25 FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 147
F RS N+ F S S +L +W R P CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201
>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
identical to C2H2 zinc-finger protein SERRATE
GI:14486602 from [Arabidopsis thaliana]
Length = 720
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -2
Query: 299 KGHE*PPFQHTILQILWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPHF- 123
KG E T++ LW V L YYG T+ A L H G +D + D ++ F
Sbjct: 395 KGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGL-RHVRAE-GKVSDAKGDENESKFD 452
Query: 122 -HAGVAVLGQLPSE 84
H + GQ P E
Sbjct: 453 SHWQERLKGQDPLE 466
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 152 LRADGSDPHFHAGVAVLGQLPSEELIEF 69
L+ SDP GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445
>At1g27430.1 68414.m03343 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1531
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 570 FDL--DS*YSLSEKHMSGSSVDVSLQGSPEWIMSPSTNFIDLAR*PRSLPDTTTSQPRAP 397
FDL D +S S + + D S+ SP+W+ + S+ + R P +P S P
Sbjct: 6 FDLPDDLIFSKSSDQLKELASDNSIPLSPQWLYTKSSEYKMDVRSPTPVPMGNPSDPNPK 65
Query: 396 DS 391
D+
Sbjct: 66 DA 67
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 398 GARGCEVVVSGKLRGQRAKSMKFVDG 475
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 30 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 206
K RK G + KA + E+ ++ GYSG P+ + ++ +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,774
Number of Sequences: 28952
Number of extensions: 348794
Number of successful extensions: 1104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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