Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00169
(381 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 142 2e-33
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 113 1e-24
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 109 2e-23
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 108 4e-23
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 7e-19
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 88 6e-17
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 83 2e-15
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 2e-11
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 2e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 2e-10
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 66 3e-10
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 5e-10
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 64 8e-10
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 61 8e-09
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 60 1e-08
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 59 2e-08
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 59 3e-08
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 58 6e-08
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 57 1e-07
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 57 1e-07
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 54 9e-07
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 54 1e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 2e-06
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 51 6e-06
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 51 8e-06
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 48 4e-05
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 47 1e-04
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 47 1e-04
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 46 3e-04
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 44 7e-04
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 42 0.005
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 42 0.005
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 41 0.007
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 0.34
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 1.8
UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;... 33 2.4
UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep: CG1504... 33 2.4
UniRef50_UPI0000DD794E Cluster: PREDICTED: hypothetical protein;... 32 3.2
UniRef50_A4C649 Cluster: Glycosyl transferase, group 1 family pr... 31 5.5
UniRef50_Q55DS5 Cluster: Putative uncharacterized protein; n=1; ... 31 5.5
UniRef50_A3DM74 Cluster: Putative uncharacterized protein; n=1; ... 31 5.5
UniRef50_UPI0000F2B91C Cluster: PREDICTED: hypothetical protein;... 31 7.3
UniRef50_Q9I1P6 Cluster: Putative uncharacterized protein; n=1; ... 31 7.3
UniRef50_Q1NX60 Cluster: Putative uncharacterized protein; n=2; ... 31 7.3
UniRef50_A3Q5C9 Cluster: Uncharacterized domain 1; n=5; Mycobact... 31 7.3
UniRef50_Q3B5X5 Cluster: Outer membrane protein-like precursor; ... 31 9.6
UniRef50_Q9EYT6 Cluster: Sensor protein; n=10; Pseudomonas|Rep: ... 31 9.6
UniRef50_Q0R4F4 Cluster: Glycogen debranching enzyme; n=1; Micro... 31 9.6
UniRef50_A6TSZ4 Cluster: Pseudouridine synthase; n=2; Clostridia... 31 9.6
UniRef50_A4XNA1 Cluster: Putative uncharacterized protein precur... 31 9.6
UniRef50_Q5PSC3 Cluster: Ribosomal protein S3; n=39; Halimeda|Re... 31 9.6
UniRef50_Q0UFI8 Cluster: Putative uncharacterized protein; n=1; ... 31 9.6
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 31 9.6
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 142 bits (345), Expect = 2e-33
Identities = 71/82 (86%), Positives = 76/82 (92%)
Frame = +3
Query: 9 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 188
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 189 GEKGRRIRELTSVVQKRFNIPE 254
GEKGRRIRELT+VVQKRF PE
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPE 81
Score = 84.6 bits (200), Expect = 6e-16
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +2
Query: 257 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 83 SVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 113 bits (272), Expect = 1e-24
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +3
Query: 15 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 194
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 195 KGRRIRELTSVVQKRFNIPEN 257
KG++I+ELTSVVQKRF EN
Sbjct: 62 KGKKIKELTSVVQKRFEFLEN 82
Score = 51.6 bits (118), Expect = 5e-06
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 257 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAV 355
SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 83 SVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM 115
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 109 bits (261), Expect = 2e-23
Identities = 52/80 (65%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 204 RIRELTSVVQKRFNI-PENL 260
RI ELTS++ KRF + PE +
Sbjct: 66 RIHELTSLIVKRFKLSPEGI 85
Score = 54.4 bits (125), Expect = 7e-07
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 248 SRESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
S E + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVL
Sbjct: 81 SPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVL 124
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 108 bits (259), Expect = 4e-23
Identities = 52/77 (67%), Positives = 64/77 (83%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 204 RIRELTSVVQKRFNIPE 254
RIRELT+ +Q+RFN E
Sbjct: 116 RIRELTACLQQRFNYKE 132
Score = 52.4 bits (120), Expect = 3e-06
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +2
Query: 233 EAIQHSRESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
+ + ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++
Sbjct: 126 QRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGII 174
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 7e-19
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +3
Query: 27 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 197
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 87.8 bits (208), Expect = 6e-17
Identities = 39/78 (50%), Positives = 58/78 (74%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 204 RIRELTSVVQKRFNIPEN 257
+ +ELT +QKRF ++
Sbjct: 78 KHKELTQFLQKRFGYSDD 95
Score = 39.9 bits (89), Expect = 0.016
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +2
Query: 245 HSRESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 364
+S + ++++AE + +GLCA AQ E++ YKL+ + VR A
Sbjct: 92 YSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLA 131
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 83.0 bits (196), Expect = 2e-15
Identities = 38/83 (45%), Positives = 55/83 (66%)
Frame = +3
Query: 9 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 188
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 189 GEKGRRIRELTSVVQKRFNIPEN 257
GRR++E+ ++QKR+ + E+
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKED 83
Score = 45.6 bits (103), Expect = 3e-04
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
+S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++
Sbjct: 83 DSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSII 124
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 2e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +3
Query: 93 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 227
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 2e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +3
Query: 93 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 230
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 2e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 93 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 227
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.002
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +3
Query: 93 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 188
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 65.7 bits (153), Expect = 3e-10
Identities = 28/72 (38%), Positives = 49/72 (68%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 213 ELTSVVQKRFNI 248
ELT +++K+F +
Sbjct: 64 ELTRILEKQFGL 75
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 5e-10
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +3
Query: 21 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 158
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 64.1 bits (149), Expect = 8e-10
Identities = 24/77 (31%), Positives = 53/77 (68%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 204 RIRELTSVVQKRFNIPE 254
IR++T+ ++ RFN+ +
Sbjct: 61 NIRKITTELEDRFNLDD 77
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 60.9 bits (141), Expect = 8e-09
Identities = 25/72 (34%), Positives = 48/72 (66%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 213 ELTSVVQKRFNI 248
+LT V ++++
Sbjct: 64 KLTRDVANKYSL 75
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 60.1 bits (139), Expect = 1e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +3
Query: 6 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 185
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 186 LGEKGRRIRELTSVVQKRF 242
+G +GR IR + VQ+RF
Sbjct: 62 IGRRGRNIRRVEEEVQERF 80
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 59.3 bits (137), Expect = 2e-08
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +2
Query: 257 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
+VELYAEK R AIAQAESLR+KL+GGL VRRA YGVL
Sbjct: 137 NVELYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVL 177
Score = 57.6 bits (133), Expect = 7e-08
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +3
Query: 150 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEN 257
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF EN
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLEN 136
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 58.8 bits (136), Expect = 3e-08
Identities = 24/72 (33%), Positives = 47/72 (65%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 213 ELTSVVQKRFNI 248
+LT + ++I
Sbjct: 64 QLTQDLATDYDI 75
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 58.0 bits (134), Expect = 6e-08
Identities = 22/72 (30%), Positives = 48/72 (66%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 213 ELTSVVQKRFNI 248
+T ++ +F++
Sbjct: 63 AITQKLKNKFDL 74
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 57.2 bits (132), Expect = 1e-07
Identities = 25/81 (30%), Positives = 53/81 (65%)
Frame = +3
Query: 9 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 188
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 189 GEKGRRIRELTSVVQKRFNIP 251
G +G+ I+++T V+++ F IP
Sbjct: 61 GRRGQTIKQITKVLEEWFGIP 81
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 56.8 bits (131), Expect = 1e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 213 ELTSVVQKRFNI 248
+L + +K F +
Sbjct: 65 QLAQIFEKVFGL 76
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 54.0 bits (124), Expect = 9e-07
Identities = 22/72 (30%), Positives = 43/72 (59%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 213 ELTSVVQKRFNI 248
ELT + +++
Sbjct: 63 ELTETLATEYSV 74
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 53.6 bits (123), Expect = 1e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 213 ELTSVVQKRFNI 248
+L V++K F +
Sbjct: 65 QLAQVLEKFFGL 76
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 2e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 93 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 233
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 51.2 bits (117), Expect = 6e-06
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = +3
Query: 69 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 248
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 50.8 bits (116), Expect = 8e-06
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +3
Query: 39 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 218
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 219 TSVVQKRFNIPE 254
+ +R +P+
Sbjct: 81 QHLAAQRLEVPD 92
Score = 45.2 bits (102), Expect = 4e-04
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 364
ESVE+ EKV +GLCA+ QA +R K++GG+ RRA
Sbjct: 93 ESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRA 129
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 48.4 bits (110), Expect = 4e-05
Identities = 18/73 (24%), Positives = 43/73 (58%)
Frame = +3
Query: 30 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 209
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 210 RELTSVVQKRFNI 248
+++T ++K++ I
Sbjct: 62 QQMTDTLEKKYGI 74
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 47.2 bits (107), Expect = 1e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 36 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 215
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 216 LTSVVQKRFNI 248
+ V+++ F I
Sbjct: 66 IAEVLEREFGI 76
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 47.2 bits (107), Expect = 1e-04
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 213 ELTSVVQKRFNI 248
LT + K F I
Sbjct: 64 ALTEKL-KDFGI 74
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 45.6 bits (103), Expect = 3e-04
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +3
Query: 33 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 212
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 213 ELTSVVQKRFNIPENL 260
+L +++Q F + EN+
Sbjct: 67 KLMTIMQTHFGL-ENV 81
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 44.4 bits (100), Expect = 7e-04
Identities = 19/71 (26%), Positives = 40/71 (56%)
Frame = +3
Query: 36 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 215
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 216 LTSVVQKRFNI 248
+++++ + +
Sbjct: 72 ISNILTTKLGV 82
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 41.5 bits (93), Expect = 0.005
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 39 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 218
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 219 TSVVQKRF 242
++ RF
Sbjct: 76 EYLLAGRF 83
Score = 32.7 bits (71), Expect = 2.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
++ ++ +K+ RGL A ++LR KL + +RRA Y ++
Sbjct: 88 KNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSII 129
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 41.5 bits (93), Expect = 0.005
Identities = 16/71 (22%), Positives = 40/71 (56%)
Frame = +3
Query: 36 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 215
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 216 LTSVVQKRFNI 248
L +++ +FN+
Sbjct: 63 LADILKSKFNL 73
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 41.1 bits (92), Expect = 0.007
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 36 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 215
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 216 LTSVVQKRFNI 248
L ++ F +
Sbjct: 69 LQYRLKSDFKL 79
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 0.34
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 42 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 161
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 33.1 bits (72), Expect = 1.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 221 SELTDSASFLSEHTLCPGGHNNDLRADGSD 132
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 499
Score = 32.7 bits (71), Expect = 2.4
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 34 SENLLEMGFSRQNSMS--SSLGSWPRTATPAW-KCGSLPSARRSLLWPPGHRVCSERKDA 204
S ++ SR NS+ SS R + W +C L RR+LLW PG VC R+D
Sbjct: 218 SVQFMDYKASRSNSVETHSSERRLQRNPSSEWCECEDLLLRRRALLWRPGGSVC-VREDE 276
Query: 205 ESVSS 219
S S
Sbjct: 277 SSPDS 281
>UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep:
CG15046-PA - Drosophila melanogaster (Fruit fly)
Length = 494
Score = 32.7 bits (71), Expect = 2.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 19 TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPS 144
T QRS +L+ +G+ + L P P W CG LP+
Sbjct: 364 TRLQRSGSLVAVGWGKGEDTDCPLFEMPMRLRPTWACGDLPN 405
>UniRef50_UPI0000DD794E Cluster: PREDICTED: hypothetical protein;
n=2; Homo/Pan/Gorilla group|Rep: PREDICTED: hypothetical
protein - Homo sapiens
Length = 324
Score = 32.3 bits (70), Expect = 3.2
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +1
Query: 34 SENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGHRVCSERKDAES 210
S LL+MG R ++ + G PR C PS R S + PPG RVC + D +
Sbjct: 215 SRCLLQMGSLRLAAVWAFAG--PRRFCGVLGCVCSPSGRGSRIRPPGRRVCPKLGDGRA 271
>UniRef50_A4C649 Cluster: Glycosyl transferase, group 1 family
protein; n=1; Pseudoalteromonas tunicata D2|Rep:
Glycosyl transferase, group 1 family protein -
Pseudoalteromonas tunicata D2
Length = 399
Score = 31.5 bits (68), Expect = 5.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 182 TLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEELIEFCLENP 54
T C H R+DGS+ H HA GQL +E+ I+F + P
Sbjct: 7 TKCLYFHYQKYRSDGSNTHTHAFKEHFGQLCNEQGIDFSVIAP 49
>UniRef50_Q55DS5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1546
Score = 31.5 bits (68), Expect = 5.5
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 18 NNISKKRKFVG-DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 194
N I K K +G + F + + L + V +TP+ S I+ +R+ + E
Sbjct: 631 NQIMYKLKLLGMNAAFSFKTQITFSDTLVIGVATATAVFLTPLPSPPILQISRSLEITDE 690
Query: 195 KGRRIRELTSVVQKR 239
K RR+ EL + ++K+
Sbjct: 691 KTRRLHELQTKIEKK 705
>UniRef50_A3DM74 Cluster: Putative uncharacterized protein; n=1;
Staphylothermus marinus F1|Rep: Putative uncharacterized
protein - Staphylothermus marinus (strain ATCC 43588 /
DSM 3639 / F1)
Length = 477
Score = 31.5 bits (68), Expect = 5.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 159 IMATRTQSVLGEKGRRIRELTSVVQKRFNIP 251
I AT +L +KG RI + ++++++RFN+P
Sbjct: 10 ITATAVSKILLDKGYRIVQASNIIRERFNLP 40
>UniRef50_UPI0000F2B91C Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 268
Score = 31.1 bits (67), Expect = 7.3
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 106 TATPAWKCGSLPSARRSLLWPPGHRVCSERKD--AESVSSLP 225
T+ P+W+CG PS R WP ++ +ERK A SLP
Sbjct: 47 TSDPSWRCG--PSKARQPSWPQFPQLSNERKKERATPAVSLP 86
>UniRef50_Q9I1P6 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas aeruginosa|Rep: Putative uncharacterized
protein - Pseudomonas aeruginosa
Length = 339
Score = 31.1 bits (67), Expect = 7.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 245 VESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAV 105
++S + Y E+ + F + H L PGG N SDP+ +GV +
Sbjct: 139 LQSNISYLIEMGINIDFTARHELPPGGRGNRATIPTSDPNGESGVTI 185
>UniRef50_Q1NX60 Cluster: Putative uncharacterized protein; n=2;
Deltaproteobacteria|Rep: Putative uncharacterized
protein - delta proteobacterium MLMS-1
Length = 1693
Score = 31.1 bits (67), Expect = 7.3
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 48 GDGVFKAELNEFLTRELAEDGYSGVEVRVTPI-----RSEIIIMATRTQSVLGEKGRRIR 212
G V E FL+RE G+ E V I S+I AT Q++LG +GR++
Sbjct: 328 GKSVIGKEAVAFLSREFFAFGFRVEEFAVAHIDETLHNSQIPARATELQAILGAQGRKVL 387
Query: 213 ELTSV 227
+ SV
Sbjct: 388 VIESV 392
>UniRef50_A3Q5C9 Cluster: Uncharacterized domain 1; n=5;
Mycobacterium|Rep: Uncharacterized domain 1 -
Mycobacterium sp. (strain JLS)
Length = 150
Score = 31.1 bits (67), Expect = 7.3
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = -3
Query: 310 GDSAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTLCVLVAIIMISERMGVT 131
G A H + FY + TTE +LRP S + I+ + +R GV
Sbjct: 63 GGCLSAMVDHCLGVVFYPVIPAGSWVATTEFKLNLLRPVSTGVCVAVTDIVSLGKRSGVA 122
Query: 130 R 128
R
Sbjct: 123 R 123
>UniRef50_Q3B5X5 Cluster: Outer membrane protein-like precursor;
n=2; Chlorobium/Pelodictyon group|Rep: Outer membrane
protein-like precursor - Pelodictyon luteolum (strain
DSM 273) (Chlorobium luteolum (strain DSM273))
Length = 609
Score = 30.7 bits (66), Expect = 9.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 167 HQDTECARRERTQNP*AHFRSTEAIQHSRESVELYAEKVATRGLCAIAQAESLRYK 334
H+ E RRE + F + A+ ES YAE + + I +A+SLR+K
Sbjct: 521 HEGMELFRREEYARADSTFSALRALDPFNESARQYAEVLIPARVKRIDKAQSLRHK 576
>UniRef50_Q9EYT6 Cluster: Sensor protein; n=10; Pseudomonas|Rep:
Sensor protein - Pseudomonas fluorescens
Length = 403
Score = 30.7 bits (66), Expect = 9.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 105 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 230
D YS +E RVT ++ E+ +++ + L EK R L +++
Sbjct: 44 DSYSMLEARVTELKGELAVVSAQRMQELAEKERLANRLQNLL 85
>UniRef50_Q0R4F4 Cluster: Glycogen debranching enzyme; n=1;
Micrococcus luteus|Rep: Glycogen debranching enzyme -
Micrococcus luteus (Micrococcus lysodeikticus)
Length = 250
Score = 30.7 bits (66), Expect = 9.6
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 94 SW-PRTATPAWKCGSLPSARRSLLWPPGHRVCSERKDAESVSSLP*YRSDSTFQRIC 261
SW PR +T +CGS P WP R C R S S P +R +R C
Sbjct: 130 SWTPRASTRTARCGSTPPCSP---WPASPRCCCARGRNRSRSRTPPWRRPWRRRRRC 183
>UniRef50_A6TSZ4 Cluster: Pseudouridine synthase; n=2;
Clostridiaceae|Rep: Pseudouridine synthase -
Alkaliphilus metalliredigens QYMF
Length = 308
Score = 30.7 bits (66), Expect = 9.6
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 140 HP-LGDHYYGHQDTECARRE 196
HP LGDH YG+ DTE RR+
Sbjct: 248 HPMLGDHLYGYVDTELIRRQ 267
>UniRef50_A4XNA1 Cluster: Putative uncharacterized protein
precursor; n=1; Pseudomonas mendocina ymp|Rep: Putative
uncharacterized protein precursor - Pseudomonas
mendocina ymp
Length = 178
Score = 30.7 bits (66), Expect = 9.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 43 LLEMGFSRQNSMSSSLGSWPRTATPAWKCGSL 138
L E G+SR++ SSL SW +A P G L
Sbjct: 28 LKETGWSRRSDFESSLSSWSNSAVPTLADGQL 59
>UniRef50_Q5PSC3 Cluster: Ribosomal protein S3; n=39; Halimeda|Rep:
Ribosomal protein S3 - Halimeda simulans
Length = 275
Score = 30.7 bits (66), Expect = 9.6
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 72 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 236
L L ++ A+ G+ +E+ R EI+I + + ++G+KG +++L ++K
Sbjct: 39 LRTILPKQYAKAGFEKIEISRKIENHLEIVIRVQKPEVLIGKKGENLKKLLESIKK 94
>UniRef50_Q0UFI8 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1614
Score = 30.7 bits (66), Expect = 9.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 227 YGSELTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEELIE 72
YG +D S LS + G +N+ D S P HA + + QL S IE
Sbjct: 1136 YGEHWSDLLSSLSASWVSTNGLDNETGEDSSIPFVHASLKLYAQLRSLTQIE 1187
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 30.7 bits (66), Expect = 9.6
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +3
Query: 27 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 206
+ R F G ++ E+L +L S V + + I I + R V+G+KG
Sbjct: 24 ASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGED 83
Query: 207 IRELTSVVQKRFNIP 251
I L + ++ +P
Sbjct: 84 IENLKKELSRQLGVP 98
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,613,882
Number of Sequences: 1657284
Number of extensions: 7058563
Number of successful extensions: 21523
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 21127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21520
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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