Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00169
(381 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 128 2e-31
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 0.57
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 25 3.0
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 25 3.0
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 25 3.0
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 4.0
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 5.3
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 5.3
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 5.3
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 25 5.3
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 24 7.0
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 24 7.0
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 24 7.0
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 9.3
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 128 bits (310), Expect = 2e-31
Identities = 64/82 (78%), Positives = 68/82 (82%)
Frame = +3
Query: 12 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 191
A ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62
Query: 192 EKGRRIRELTSVVQKRFNIPEN 257
EKGRRIRELT++VQKRF EN
Sbjct: 63 EKGRRIRELTALVQKRFKFAEN 84
Score = 71.7 bits (168), Expect = 4e-14
Identities = 33/44 (75%), Positives = 37/44 (84%)
Frame = +2
Query: 248 SRESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
+ +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVL
Sbjct: 82 AENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVL 125
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 0.57
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = +1
Query: 88 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 225
L S+P AW+ LPS R+ L P P R+ ++K A +SS+P
Sbjct: 8 LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLL 369
GG P RYRPG ++ + R + T L+
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLI 63
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLL 369
GG P RYRPG ++ + R + T L+
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLI 63
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLL 369
GG P RYRPG ++ + R + T L+
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLI 63
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 4.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = -3
Query: 337 KLVS*RFGLGDSAKATSSHLFSIQFYRFSGMLNRFCTTEVSS-------RILRPFSPSTL 179
K V+ + G D K + + +FYRF L++ E+S + RP+ +
Sbjct: 533 KYVAEKSGCSDYRKILVTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSD 592
Query: 178 CVLVAIIMISE 146
+LV + IS+
Sbjct: 593 DILVPVYHISD 603
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 24.6 bits (51), Expect = 5.3
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = -2
Query: 266 ILQILWNVESLLYYG 222
+L+++WN+ + +YYG
Sbjct: 339 LLKLIWNIYTFVYYG 353
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 5.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -2
Query: 164 HNND--LRADGSDPH--FHAGVAVLGQLPSEELIEFCLENPISNKFS 36
HNN L +D P+ F G L PS+ + F ENP+ K S
Sbjct: 287 HNNSIYLMSDNLVPNLDFMQGAKRLASCPSDIISSFTYENPLLPKQS 333
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 5.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 127 CGSLPSARRSLLWP 168
C +LPS + +L+WP
Sbjct: 87 CSTLPSVKSTLIWP 100
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 5.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 307 DSAKATSSHLFSIQFYRFSGMLNRFCTTEVS 215
+SA+AT + FYR + LN+F ++
Sbjct: 202 ESARATIDECMRVLFYRDARSLNKFSVATIT 232
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 46 LEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSARRS 156
L+ +S +S ++P+T P W+ G+ P ++ S
Sbjct: 129 LDKTYSSIDSKKDFKYNFPKTQAPEWRRGAKPLSKTS 165
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 191 SEHTLCPGGHNNDLRADGSDPHFHAGVAVLG 99
S+ + GG +NDL G D + H +LG
Sbjct: 77 SQKCIRAGGKHNDLEDVGKDNYHHTMFEMLG 107
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 7 SWP*TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWK 126
+W + ++ L+E +R NS+++ LG+ P W+
Sbjct: 329 AWEESELKKLYTLVEQEGTRWNSIANKLGTSPAACMSQWR 368
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 61 SRQNSMSSSLGSWPRTATPA 120
S+ + SS GS PRTA+PA
Sbjct: 67 SQLRAGGSSTGSTPRTASPA 86
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.8 bits (49), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 274 SIQFYRFSGMLNRFCTTEVSSRILR 200
SI F G++ FC +EV +LR
Sbjct: 1296 SIDAKTFQGVVRTFCKSEVKESMLR 1320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,665
Number of Sequences: 5004
Number of extensions: 29053
Number of successful extensions: 81
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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