Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00169
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 142 8e-35
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 1.6
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 1.6
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 27 3.8
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 27 5.0
01_06_1777 + 39818212-39819696 27 5.0
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 27 5.0
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 27 6.6
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 27 6.6
06_03_0311 + 19466258-19466303,19466496-19467087,19468059-194685... 27 6.6
11_06_0463 + 23879587-23879771,23879783-23881658 26 8.7
11_01_0232 + 1794081-1795175,1796087-1796782 26 8.7
10_08_0935 + 21670372-21671396,21672057-21672987 26 8.7
06_03_1064 - 27300735-27301829 26 8.7
04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791... 26 8.7
01_01_1108 + 8758486-8758815,8758913-8758960,8761512-8761664,876... 26 8.7
01_01_0206 - 1770622-1771347 26 8.7
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 142 bits (344), Expect = 8e-35
Identities = 70/78 (89%), Positives = 73/78 (93%)
Frame = +3
Query: 24 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 204 RIRELTSVVQKRFNIPEN 257
RIRELTSVVQKRFN PEN
Sbjct: 67 RIRELTSVVQKRFNFPEN 84
Score = 78.6 bits (185), Expect = 2e-15
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = +2
Query: 260 VELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 86 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 125
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 85 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 189
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 149 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 48
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 280 GGYSWPLRYRPG-RISKIQAYRRSRCTSCLLWC 375
G SW RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.1 bits (57), Expect = 5.0
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 266 ILQILWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGS-DPHFHAGVAVLGQLP 90
+L L + ES L G ++T S T P D ADGS DP F V+ + P
Sbjct: 60 MLNFLKDFESKL--GIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYP 117
Query: 89 SEELIEF 69
ELI+F
Sbjct: 118 FAELIQF 124
>01_06_1777 + 39818212-39819696
Length = 494
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 254 ESVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 364
E E+ +KV +GL + SLR ++ GL++ A
Sbjct: 242 EQAEIVLDKVIRKGLRSSGSRRSLRVPMLAGLSIEDA 278
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +3
Query: 78 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 200
+F+T ++ DG++ VE R ++ + +++ +R +G G
Sbjct: 150 QFVTAKVGNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDG 190
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 146 ADGSDPHFHAGVAVLGQLPSEELIEFCLENPISNKFSL 33
ADG PH HA A G++ E + ++ P+ +F+L
Sbjct: 56 ADGERPHGHAAEAGTGRMNLNEYM-VAVDRPLGVRFAL 92
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 301 AKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPS 185
++ + +H F I S + C+ VS+R+LRPF S
Sbjct: 740 SRKSMNHSFGIGGGETSNTGSSLCSHPVSARLLRPFEQS 778
>06_03_0311 +
19466258-19466303,19466496-19467087,19468059-19468524,
19470028-19470081,19470112-19470226,19470499-19470605
Length = 459
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 187 STLCVLVAIIMISERMGVTR 128
++LCVL+ I++ISE +GV R
Sbjct: 3 TSLCVLLCILVISEVVGVPR 22
>11_06_0463 + 23879587-23879771,23879783-23881658
Length = 686
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 280 GGYSWPLRYRPGR 318
GGY+W LRY P R
Sbjct: 367 GGYTWRLRYYPNR 379
>11_01_0232 + 1794081-1795175,1796087-1796782
Length = 596
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 316 GLGDSAKATSSHLFSIQFYRFSGMLNR 236
G+GD +SH + F+R+SG R
Sbjct: 295 GVGDHLYVVASHAVELSFWRWSGATGR 321
>10_08_0935 + 21670372-21671396,21672057-21672987
Length = 651
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 76 MSSSLGSWPRTATPAWKCGSLPSA 147
MSSSLGS P+ A C + P+A
Sbjct: 397 MSSSLGSDPKRGNNAQSCAAQPAA 420
>06_03_1064 - 27300735-27301829
Length = 364
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 209 DSASFLSEHTLCPGGHNNDLRADGSDP 129
D F S C GGH+ ++R DP
Sbjct: 27 DDGEFFSSRRYCVGGHDWEIRLRPKDP 53
>04_04_0634 -
26777889-26778452,26778526-26778797,26778905-26779117,
26779497-26779578
Length = 376
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 340 DKLVS*RFGLGDSAKATSSHLFSIQFYRFSG 248
DKLV+ +FG GDS S+ +Q ++ G
Sbjct: 323 DKLVASQFGHGDSTAKEPSYCNPVQVFQVEG 353
>01_01_1108 +
8758486-8758815,8758913-8758960,8761512-8761664,
8761749-8761847,8761884-8761991,8762078-8762200,
8763030-8763287
Length = 372
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 64 RQNSMSSSLGSWPRTATPAW-KCGSLPSARRSLLWPPGHRVCSERKDAESVSS 219
R+ + +LGSW P + ++ ARR L P HR+ + +DA+ +S
Sbjct: 311 REAAAGPNLGSWGVLFRPIGPEFATIRVARRRRLAPSVHRIKNVARDADVAAS 363
>01_01_0206 - 1770622-1771347
Length = 241
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 19 TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSAR 150
T +QR F+R S++S+ + PR+ + ++ C S P R
Sbjct: 104 TSYQRRPGSWTSPFTRSCSVNSATTAAPRSGSGSFSCPSFPLMR 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,481,818
Number of Sequences: 37544
Number of extensions: 204192
Number of successful extensions: 625
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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