Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00169
         (381 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       144   2e-35
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)                    27   3.9  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_45126| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_10998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_37823| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)             27   6.8  
SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)                27   6.8  
SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  144 bits (349), Expect = 2e-35
 Identities = 70/77 (90%), Positives = 74/77 (96%)
 Frame = +3

Query: 24  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 203
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 204 RIRELTSVVQKRFNIPE 254
           RIRELTSVVQKRF  PE
Sbjct: 65  RIRELTSVVQKRFGFPE 81



 Score = 83.8 bits (198), Expect = 4e-17
 Identities = 40/41 (97%), Positives = 40/41 (97%)
 Frame = +2

Query: 257 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
           SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVL
Sbjct: 83  SVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVL 123


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 61  SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH-RVCSERKDAESVSSLP*Y 231
           +R+  ++ +L + P T     +CG + +AR  L+  P H R        + V SLP Y
Sbjct: 272 TRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVISLPSY 329


>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 254 LWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPH 126
           LWN++  +        +  F + H+ C GG N D  A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227


>SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)
          Length = 120

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +3

Query: 69  ELNEFLTRELAE-DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 245
           E+ E + + +AE +G SG EV+   ++ +  ++  +TQ    E  ++ +EL  + +KR N
Sbjct: 20  EVIEVVNKLIAEGEGESGNEVKENKVKKKPSVIK-QTQ----EDEKKTKELEELKEKRIN 74

Query: 246 IPE 254
           +P+
Sbjct: 75  LPQ 77


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 260 QILWNVESLLYYGSELTDSASFLSEHTLCPGGHNN 156
           + L NV+SLL  GS++  S + +  H + P G  N
Sbjct: 214 ECLNNVKSLLTTGSDVVTSTTVMQRHLMPPPGKPN 248


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 150 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEN 257
           E+I +  +T  V+GE GR I  + S    R  I E+
Sbjct: 399 EVIPLGAKTSRVIGEGGRSINSIRSQSGARIQIKED 434


>SB_45126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 298 KATSSHLFSIQFYRFSGMLNRFCTTEVSSRIL 203
           K  + H  +I F R   M+ R CTT+ S+ ++
Sbjct: 60  KLQNDHQAAIAFKRAKSMVGRSCTTQTSTLVI 91


>SB_10998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 298 KATSSHLFSIQFYRFSGMLNRFCTTEVSSRIL 203
           K  + H  +I F R   M+ R CTT+ S+ ++
Sbjct: 60  KLQNDHQAAIAFKRAKSMVGRSCTTQTSTLVI 91


>SB_37823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 296 GHE*PPFQHTILQILWNVESLLYYGS 219
           GH    ++H  +++ WN+E L +Y S
Sbjct: 263 GHHVGDWEHVTIRLNWNMEPLQFYAS 288


>SB_52203| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
          Length = 611

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 283 GYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
           GY++ LRY+P  ++     R++R  + +LW +P
Sbjct: 363 GYNYTLRYKPNTVTN----RKTRKRNNILWYNP 391


>SB_43370| Best HMM Match : RhoGAP (HMM E-Value=1.6e-18)
          Length = 865

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   IMAVNNISKKRKFVGDGVFKAELNEF 83
           I  +N+  +KR  + DGVFK  L EF
Sbjct: 517 ISDMNHEGRKRDTIVDGVFKKSLQEF 542


>SB_17995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 19  TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA-RRSLLWP 168
           T   R +  L  GF    ++S+ +G++  TA   W C S   A   SL++P
Sbjct: 281 TAHLRDDGRLISGFETGRNLSAIVGAFSYTALTTWLCVSPQVAMTTSLVFP 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,856,806
Number of Sequences: 59808
Number of extensions: 226280
Number of successful extensions: 762
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)