Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00169
(381 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 124 3e-29
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 31 0.37
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 31 0.37
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 31 0.37
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 29 1.1
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 29 1.1
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 28 2.0
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 27 3.4
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 27 3.4
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 27 3.4
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 26 7.9
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 26 7.9
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 26 7.9
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 26 7.9
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 26 7.9
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 26 7.9
U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical pr... 26 7.9
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 26 7.9
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 26 7.9
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 26 7.9
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 26 7.9
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 124 bits (298), Expect = 3e-29
Identities = 61/83 (73%), Positives = 71/83 (85%), Gaps = 1/83 (1%)
Frame = +3
Query: 9 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 185
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 186 LGEKGRRIRELTSVVQKRFNIPE 254
LGE+GRRI+ELTSVVQKRF E
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEE 83
Score = 79.8 bits (188), Expect = 6e-16
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = +2
Query: 257 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 379
SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVL
Sbjct: 85 SVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVL 125
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 30.7 bits (66), Expect = 0.37
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 304 SAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTL 179
S + S +L S++ + ++ C TEVS+ P SPSTL
Sbjct: 60 STSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 101
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 30.7 bits (66), Expect = 0.37
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 304 SAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTL 179
S + S +L S++ + ++ C TEVS+ P SPSTL
Sbjct: 100 STSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 141
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 30.7 bits (66), Expect = 0.37
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 304 SAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTL 179
S + S +L S++ + ++ C TEVS+ P SPSTL
Sbjct: 60 STSSASPNLVSVEMHPYTNFREVECQTEVSTISSHPTSPSTL 101
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 21 NISKKRKFVGDGVFKAELNEFLTRELAEDGY 113
+I KK F GDG F E E+ +DGY
Sbjct: 892 DIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 21 NISKKRKFVGDGVFKAELNEFLTRELAEDGY 113
+I KK F GDG F E E+ +DGY
Sbjct: 892 DIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 304 SAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTL 179
S + S +L S++ + ++ C TEVS+ P SPSTL
Sbjct: 108 STSSASPNLVSVEMHPYTKSEEVECQTEVSTISSHPTSPSTL 149
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 96 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPE 254
L G G + IR+E+ + ++G+ G+ +REL + IPE
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPE 595
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +3
Query: 96 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPE 254
L G G + IR+E+ + ++G+ G+ +REL + IPE
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPE 719
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 304 SAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTL 179
S + S +L S++ + ++ + C TEVS+ P SPSTL
Sbjct: 108 STSSASPNLVSVEMHPYTKEVE--CQTEVSTISSHPTSPSTL 147
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 304 SAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTL 179
S + S +L S++ + ++ + C TEVS+ P SPSTL
Sbjct: 108 STSSASPNLVSVEMHPYTKEVE--CQTEVSTISSHPTSPSTL 147
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 304 SAKATSSHLFSIQFYRFSGMLNRFCTTEVSSRILRPFSPSTL 179
S + S +L S++ + ++ + C TEVS+ P SPSTL
Sbjct: 120 STSSASPNLVSVEMHPYTKEVE--CQTEVSTISSHPTSPSTL 159
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>U61946-8|AAC24392.1| 185|Caenorhabditis elegans Hypothetical
protein F47C12.7 protein.
Length = 185
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 262 YRFSGMLNRFCTTEVSSRILRPFSPSTLCV 173
Y F+ +LN CTT+ R L+P S + + V
Sbjct: 132 YEFAYVLNHNCTTDGKIRCLKPSSTTDVPV 161
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 280 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSP 381
GG P RYRPG ++ + R + T L+ +P
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAP 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,573,305
Number of Sequences: 27780
Number of extensions: 163733
Number of successful extensions: 473
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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