Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00168
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   4.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   7.4  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 558 CFSGDSMRLNSAGL 517
           CFSG+S  L S GL
Sbjct: 110 CFSGESTVLTSTGL 123


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +3

Query: 318 CHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNL 428
           C+W   PN T   +   D     W       S+ L+L
Sbjct: 18  CNWSSGPNATLQSSACTDDLSSCWSEDMGSFSLPLDL 54


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 642 TRPSTLPSAKPV 607
           T+PST P+ KPV
Sbjct: 179 TKPSTKPTNKPV 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,270
Number of Sequences: 336
Number of extensions: 3539
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)