Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00168
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 84 2e-17
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 44 3e-05
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 42 1e-04
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 39 8e-04
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 38 0.001
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 37 0.003
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 32 0.070
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 32 0.070
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 32 0.070
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 32 0.092
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 31 0.12
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 30 0.28
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 29 0.49
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 29 0.65
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 29 0.65
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.86
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 28 1.1
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.5
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 1.5
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 28 1.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.6
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 3.5
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 27 3.5
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 27 3.5
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 26 4.6
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 26 4.6
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 4.6
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 4.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 4.6
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 6.0
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 26 6.0
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 6.0
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 25 8.0
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 25 8.0
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 8.0
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 83.8 bits (198), Expect = 2e-17
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +1
Query: 7 KDVEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGP 186
KDVEV+ PP+D++S L FSP + +L A SWD +VR +EV+ +G+++ KA GP
Sbjct: 21 KDVEVAQPPEDSISDLAFSPQA----EYLAASSWDSKVRIYEVQATGQSIGKALYEHQGP 76
Query: 187 VLDVAWHDDGTKVFMASTDKSVNV 258
VL V W DGTKV S DKS V
Sbjct: 77 VLSVNWSRDGTKVASGSVDKSAKV 100
Score = 79.8 bits (188), Expect = 4e-16
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +3
Query: 243 QKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTT-SWDKTLKFWDTRTAVPSMT 419
+ + +D+ Q QVAAHD V+ +++A + ++ T SWDKTLK+WD R + P T
Sbjct: 96 KSAKVFDIQTGQNQQVAAHDDAVRCVRFVEAMGTSPILATGSWDKTLKYWDLRQSTPIAT 155
Query: 420 LNLTERAYCADVEYPMAVVGTADRGICM 503
++L ER Y D +P+ V TA+R IC+
Sbjct: 156 VSLPERVYAMDCVHPLLTVATAERNICV 183
Score = 52.4 bits (120), Expect = 6e-08
Identities = 27/58 (46%), Positives = 36/58 (62%)
Frame = +2
Query: 530 FKRIESPLKHQHRCVSIFKDKKSKQPTGFALGSVEGRVAIQYVNPTNPKDNFTFKCHR 703
FK SPLK Q R ++ F + G+A+GSVEGR AIQ ++ N NF+F+CHR
Sbjct: 193 FKLAMSPLKFQTRSLACFI-----KGDGYAIGSVEGRCAIQNIDEKNASQNFSFRCHR 245
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +2
Query: 611 GFALGSVEGRVAIQYVNPTN--PKDNFTFKCHR 703
GF S+EGR +++Y+NP+ NFTFKCHR
Sbjct: 192 GFVSSSIEGRTSVEYINPSQEAQSKNFTFKCHR 224
Score = 34.3 bits (75), Expect = 0.017
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +3
Query: 348 CLMTTSWDKTLKFWDTRTAVPSMTLNLTERAYCADVEYPMAVVGTADRGICMY 506
C ++ SWDK+ + WD R P ++ ++ + + + V+G ++R +Y
Sbjct: 109 CFISGSWDKSFRVWDVRVKQPVEGQDIGKKIFASSSRDNILVLGCSERENLVY 161
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 79 LHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
L I+GSWD R W+V + QP++G D G K+F +S+ ++ V
Sbjct: 106 LENCFISGSWDKSFRVWDV--------RVKQPVEG-------QDIGKKIFASSSRDNILV 150
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +1
Query: 13 VEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVL 192
+E + + VS+L F+ + L +GSWD VR W++ + V P D VL
Sbjct: 460 LETLAGHEGPVSSLSFNSSG----SLLASGSWDKTVRIWDIFSRSGIVEPLPIPSD--VL 513
Query: 193 DVAWHDDGTKVFMASTD 243
+A+H DG +V +AS D
Sbjct: 514 SLAFHPDGKEVCVASLD 530
Score = 32.3 bits (70), Expect = 0.070
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 WDLAANQTMQ-VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
W + Q ++ +A H+ PV + + + + L + SWDKT++ WD
Sbjct: 452 WSVQTGQLLETLAGHEGPVSSLSFNSSGSL--LASGSWDKTVRIWD 495
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 97 AGSWDC-QVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
AGS D ++ W V+T G+ + A +GPV ++++ G+ + S DK+V +
Sbjct: 441 AGSQDSFEIFMWSVQT-GQLLETLAGH-EGPVSSLSFNSSGSLLASGSWDKTVRI 493
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 231 GFNRQKCECWDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAV 407
G + + + WDL+ ++ H+ V+T W+ A T L++ +D T++ WDTR A
Sbjct: 142 GSDDKTVKVWDLSTGAVQYDLSGHEDYVRTASWMSA---TRLVSGGYDGTIRLWDTRIAD 198
Query: 408 PSM 416
P +
Sbjct: 199 PEV 201
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 252 ECWDLAANQTMQVA-AHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN 425
+ +DL+ ++ AH PV + N T ++ S DKT+K WD T L+
Sbjct: 106 QIFDLSTRSILRALDAHQFPVHVTQFCPYAN-TTFLSGSDDKTVKVWDLSTGAVQYDLS 163
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +1
Query: 43 VSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTK 222
VS+++F+P L T L++GSWD VR W ++ T + P++ V+ DGT
Sbjct: 141 VSSIDFNP----LGTLLVSGSWDETVRIWNLQDG--TCLRMLPAHSEPIISVSISADGTL 194
Query: 223 VFMASTD 243
AS D
Sbjct: 195 CATASYD 201
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 43 VSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTK 222
+S L F P S L L++GS D Q++ WEV +++ + Q P+ D+++ DG
Sbjct: 269 ISCLRFFPISGHL---LLSGSMDNQIKIWEVYHD-RSLLRTFQGHARPIRDLSFSQDGRS 324
Query: 223 VFMASTDKSVNV 258
S DK++ +
Sbjct: 325 FLSTSFDKTIKL 336
Score = 29.5 bits (63), Expect = 0.49
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 354 MTTSWDKTLKFWDTRTAVPSMTLNLTERAYC----ADVEYPMA-VVGTADRGICMY 506
++TS+DKT+K WDT N C D + P + GTAD+ I +
Sbjct: 326 LSTSFDKTIKLWDTELGKCLNCFNSDRLTNCVKFQVDPDKPNEFLAGTADKRILQF 381
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 32.3 bits (70), Expect = 0.070
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 258 WDLAANQTMQVA-AHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTE 434
WDL + +++ V H + W +PN L T+S D T+K WD R + T+
Sbjct: 334 WDLRSGKSIMVLDEHIRQIVAMAW--SPNGYQLATSSADDTVKIWDLRKVSLAHTIP-AH 390
Query: 435 RAYCADVEY 461
+ +DV Y
Sbjct: 391 SSLVSDVRY 399
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 32.3 bits (70), Expect = 0.070
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 249 CECWDLAANQTMQV-AAHDAPVKTCH---WIKAPNYTCLMTTSWDKTLKFWDTRT 401
C+ +DL N+T + H PV C K + T SWD T+K W+ T
Sbjct: 67 CKLYDLEINKTCKTYKGHSGPVTCCQIESLRKDGKVRHIYTGSWDHTIKKWNVST 121
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 32.3 bits (70), Expect = 0.070
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 270 ANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN 425
+ + +++ H VKT W P+ L + S D +KFWD RT TL+
Sbjct: 196 STEELKLTGHGWDVKTVDW--HPSKGLLASGSKDNLVKFWDPRTGTCIATLH 245
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 31.9 bits (69), Expect = 0.092
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +3
Query: 249 CECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN 425
C+ +L+ + Q+ AHD P+ +C + + + T S D+ +K W+T + P M ++
Sbjct: 367 CDARNLSKS-VWQLQAHDGPI-SCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMVVS 423
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
+ ++ SWD +R W++E T D VL V+ D +V S DK++ +
Sbjct: 77 YALSASWDKTIRLWDLEKGECTHQFVGHTSD--VLSVSISPDNRQVVSGSRDKTIKI 131
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 37 DTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVET 141
D VS + FSP L TF+ AG WD V+ W++ET
Sbjct: 149 DWVSCVRFSPNPDNL-TFVSAG-WDKAVKVWDLET 181
Score = 29.1 bits (62), Expect = 0.65
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +3
Query: 231 GFNRQKCECWDLAAN--QTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
G + + W++ N T+ H V + P+ ++ WDK +K WD T
Sbjct: 123 GSRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLET 181
Score = 26.2 bits (55), Expect = 4.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 354 MTTSWDKTLKFWD 392
++ SWDKT++ WD
Sbjct: 79 LSASWDKTIRLWD 91
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 294 AHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTERAY 443
+H + HW N ++S+D TLK WD T + T + + Y
Sbjct: 101 SHKFGITDLHWFPFDN-GIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIY 149
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 29.5 bits (63), Expect = 0.49
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 258 WDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTA-VPSMTLNLTE 434
W+LA Q + + + TC + L++ S DKT++ W+ RT+ S+ T+
Sbjct: 298 WNLATFQQVALLEGHSSGVTCLQF---DQCKLISGSMDKTIRIWNYRTSECISILHGHTD 354
Query: 435 RAYCADVEYPMAVVGTAD 488
C + + V G+AD
Sbjct: 355 SVLCLTFDSTLLVSGSAD 372
Score = 29.1 bits (62), Expect = 0.65
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 85 TFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
T L++GS DC V+ W + GK + + GPV V D V S D ++ +
Sbjct: 364 TLLVSGSADCTVKLWHF-SGGKRI--TLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKI 418
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.1 bits (62), Expect = 0.65
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTMQ-VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WD + + + H A V C W + + L+++S D TLK WD R+
Sbjct: 416 WDGKTGKFLATLRGHVAAVYQCAW--STDSRLLVSSSQDTTLKVWDVRS 462
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 333 APNYTCLMTTSWDKTLKFWDTRTAVP 410
AP+ + + T S D T++FWD + P
Sbjct: 186 APDASIIATGSMDNTIRFWDPKKGSP 211
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 288 VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTR 398
++ H AP+ W N+ + ++S+DKT++ WD +
Sbjct: 265 LSGHTAPITCVRW-GGQNW--IYSSSYDKTIRIWDAK 298
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 91 LIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
L++ S D ++ W+V + K + + V V W DG +V DK+V +
Sbjct: 446 LVSSSQDTTLKVWDVRS--KKMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRI 499
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.65
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 249 CECWDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDT 395
CE WD +++T+ + H+ + + + T L T SWD+ ++ W +
Sbjct: 256 CEVWDSISSKTITSLTGHENRISSL--ALTSDGTMLATGSWDECVRLWSS 303
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 282 MQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTA 404
+++ H V C ++ + L+T S DKT FWD A
Sbjct: 100 VELVGHAGFVSCCKYVDDGH---LLTGSGDKTCMFWDIEQA 137
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 34 DDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMD 180
++ ++ EFSP S T + G + +R W ++ K++PK+ D
Sbjct: 324 NNNMNCAEFSPDS----TMIACGFQESYIRLWSIKADKKSLPKSTSVED 368
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 85 TFLIAGSWDCQVRCWEV 135
T L++G DC VR W+V
Sbjct: 560 TVLVSGGSDCTVRAWDV 576
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 22 SSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVA 201
S P + V +F P + +L+ DC +R W+V SG+ + + + P+L +A
Sbjct: 322 SLPHEQAVIDCKFLPNT----PYLLTACADCVIRKWDVR-SGQLLGEYTGHQE-PILCMA 375
Query: 202 WHDDGTKVFMASTDKSVNV 258
DG +V S D + V
Sbjct: 376 ITPDGKRVVTGSDDTELLV 394
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 345 TCLMTTSWDKTLKFWDTRTAVP 410
T L+TTS DK ++ WD RT P
Sbjct: 189 TRLVTTSRDKKVRVWDPRTDKP 210
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 270 ANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
AN T+Q AHD V ++ A + L+T D +K WD +T
Sbjct: 176 ANFTLQ--AHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQT 217
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 261 DLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTR 398
D + V AH P+ + + N L T S DKT+ WD R
Sbjct: 268 DASTKPARSVHAHSGPIHSVAF-NPHNDFILATCSTDKTIALWDLR 312
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 37 DTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVE 138
D V+++ F P F ++GS DC++R W ++
Sbjct: 350 DFVTSIAFHPKD---DRFFLSGSLDCKLRLWSIK 380
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 258 WDLAANQT--MQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDT 395
WD+ + +++AAH+ V ++ +PN L + DKT++ WD+
Sbjct: 205 WDIRFPKLPFLKLAAHNGVVLCVNY--SPNGVFLASCGRDKTIRIWDS 250
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 193 DVAWHDDGTKVFMASTD 243
D+AW+DDG + M S D
Sbjct: 424 DIAWNDDGNVLLMTSID 440
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 366 WDKTLKFWDTRTAVPSMTLNLTERAYCADVEYPMAVV 476
WD+++ F T S L +T+++ DVE P + V
Sbjct: 158 WDQSINFPRTTRYFTSQGLQITKKSIIKDVETPESYV 194
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +1
Query: 4 NKDVEVSSPPDDTVSALEFS-PPSVTLHTFLIAGSWDCQVRCWE-VETSGKTVPKA-AQP 174
+ V +S+ D+TV +F P TL +F + S + + E +G P +
Sbjct: 208 SSSVFISASADNTVGIWDFERSPETTLESFSSSISKKRRRKNAEFTPQAGARSPLILCEG 267
Query: 175 MDGPVLDVAWHDDGTKVFMASTDKSV 252
GPV+D+ + DD + + D ++
Sbjct: 268 HTGPVMDIVFSDDPSVAYSVGQDHTI 293
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +3
Query: 258 WDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVP 410
W T+ + A H+AP+ + Y T S D+T + WD A P
Sbjct: 430 WSKDTKSTIVKYAGHNAPIWDVQFSPFGYY--FATASHDQTARLWDVEHAAP 479
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 327 IKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTERAY-CADVEYPMAVVGT 482
+K N + + D L+FW T ++P + + + Y C D + A+ GT
Sbjct: 353 MKNENGSIFSSAGDDYVLRFWKTDCSLPFKEMRVDDGKYLCRDGSWVKAMNGT 405
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 261 DLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
D + + AHD V K + + + S DKT+K WD+ T
Sbjct: 452 DFSNRAVWTIKAHDRDVNAIQVSK--DGRIIASASQDKTIKLWDSST 496
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
F+++GS D R W+VET G+ + K ++ V +A + + + S D+ + V
Sbjct: 416 FIVSGSGDRTARLWDVET-GQCILKL--EIENGVTAIAISPNDQFIAVGSLDQIIRV 469
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTLNLTERAY-CADVEYPMAVVGTADRGICMY 506
++T S D+TL+ WD T ++ +R CA V G++D I ++
Sbjct: 362 IVTASSDRTLRTWDITTGHCIRIIHAHQRGIACAQYNGKFIVSGSSDLTIRIF 414
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +3
Query: 258 WDLAANQTMQV---AAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD--TRTAV 407
W + A++ +V H V C + P+ +++ S DKT++ WD RTAV
Sbjct: 239 WRMTASKAWEVDTCRGHFNNVSCC--LFHPHQELILSASEDKTIRVWDLNRRTAV 291
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 40 TVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETS 144
TV L SP H +L + D V+CW++ET+
Sbjct: 207 TVRGLAVSPR----HPYLFSCGEDKMVKCWDLETN 237
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 297 HDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN 425
H APV +C + L + SWDK + +WD T T N
Sbjct: 231 HTAPV-SCLALHGSEKKVL-SGSWDKMVYYWDLNTGDAISTYN 271
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 184 PVLDVAWHDDGTKVFMASTDKSV 252
P++D WH DG+ + +A T+ SV
Sbjct: 359 PIVDFCWHQDGSHLAIA-TEGSV 380
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 147 PRSFHFPTSHLAVPAASDQEGVQSDGGRRELE 52
P F P+S P+ASD E V DG EL+
Sbjct: 4 PLRFSTPSSS---PSASDNESVHDDGPTTELD 32
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 8.0
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Frame = -2
Query: 583 EDGDAAVLVLQRRLDALELGGLALQVYMQMPRSAVPTTAIGYSTSAQYALSVRLRVMLGT 404
+D LVL + + GL L +++ V TTAI T +GT
Sbjct: 75 DDSSDFTLVLPSNRMYIVIPGLMLSIFLSALDQTVITTAI--PTIVANLDGGSSYSWIGT 132
Query: 403 AVRVSQN----FRVLSQEVVMRHV*LGALIQWQVFTGASC-AATCIVWL 272
A ++Q F + EVV R + L I +F A C AA ++WL
Sbjct: 133 AYTLAQTSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWL 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,629
Number of Sequences: 5004
Number of extensions: 58948
Number of successful extensions: 279
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -