Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00168
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5833| Best HMM Match : WD40 (HMM E-Value=0.63) 83 2e-16
SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41) 42 6e-04
SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06) 40 0.001
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 35 0.056
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.11
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 33 0.17
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40) 32 0.39
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 32 0.52
SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08) 31 0.91
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 31 0.91
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 30 1.6
SB_13533| Best HMM Match : C1_4 (HMM E-Value=0.66) 30 1.6
SB_57108| Best HMM Match : WD40 (HMM E-Value=7.00649e-45) 30 2.1
SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45) 30 2.1
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 29 2.8
SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_59503| Best HMM Match : Peptidase_C27 (HMM E-Value=1.6) 29 2.8
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 29 2.8
SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16) 29 2.8
SB_25576| Best HMM Match : WD40 (HMM E-Value=1.6e-30) 29 3.7
SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05) 29 3.7
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 29 4.9
SB_6741| Best HMM Match : WD40 (HMM E-Value=0) 29 4.9
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 29 4.9
SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42) 29 4.9
SB_14411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 28 6.4
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 28 6.4
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7) 28 6.4
SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12) 28 8.5
SB_55557| Best HMM Match : Tet_res_leader (HMM E-Value=1.9) 28 8.5
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_30598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_5833| Best HMM Match : WD40 (HMM E-Value=0.63)
Length = 152
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/48 (77%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
Frame = +2
Query: 563 HRCVSIFKD-KKSKQPTGFALGSVEGRVAIQYVNPTNPKDNFTFKCHR 703
+RCVSIF+D KK+ QP GFALGSVEGRVAIQY+ P KDNFTFKCHR
Sbjct: 1 NRCVSIFRDPKKNNQPVGFALGSVEGRVAIQYIQPETAKDNFTFKCHR 48
>SB_30492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +2
Query: 566 RCVSIFKDKKSKQPTGFALGSVEGRVAIQYVNPTN--PKDNFTFKCHR 703
RC IFK + G+ L S+EGRVA++Y +P+ K F FKCHR
Sbjct: 136 RCYPIFKSQ------GYVLSSIEGRVAVEYFDPSPEVQKKKFAFKCHR 177
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +1
Query: 1 PNKDVEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVE 138
PN + ++ P+D +SA++FSP S +FL+ SWD VR ++V+
Sbjct: 6 PN-EFKLGQAPEDGISAVKFSPTS---SSFLLVSSWDTSVRLYDVQ 47
>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
Length = 1487
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 WDLAANQTMQV-AAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDT-RTAVPSMTLNLT 431
W + + ++V A H+APV + + +P++ L++ +WDKT++ W+ + V TLNLT
Sbjct: 1364 WSIQTGRLLEVLAGHEAPVSSLAF--SPSHPVLISGAWDKTVRLWNVFESKVSRETLNLT 1421
Score = 41.1 bits (92), Expect = 9e-04
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 13 VEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVL 192
+EV + + VS+L FSP H LI+G+WD VR W V S V + + V+
Sbjct: 1372 LEVLAGHEAPVSSLAFSPS----HPVLISGAWDKTVRLWNVFES--KVSRETLNLTSDVV 1425
Query: 193 DVAWHDDGTKVFMASTD 243
+A DG +V ++S D
Sbjct: 1426 SIAVRPDGREVAISSLD 1442
>SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06)
Length = 76
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTL-NLTERAYCADVEYPMAVVGTADRGICMY 506
+++TSWD++++ WDT + S+TL +E AYC + V G D I ++
Sbjct: 6 VISTSWDESIRLWDTTSGTCSLTLRGHSEVAYCCQFDDEKVVTGGGDNLIMVW 58
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 35.1 bits (77), Expect = 0.056
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 258 WDLAANQTMQV-AAHDAPVKTCHWIKAPNYTC--LMTTSWDKTLKFWDTRT 401
WD ++ ++V H + + +CH PN T L++ WDKTL WD T
Sbjct: 66 WDASSGNQLKVYTGHTSIITSCH----PNTTSRKLISGGWDKTLIMWDVET 112
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 273 NQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAV 407
N T+ + H V TC + + + L T SWDK ++ WD T V
Sbjct: 203 NVTLSLGGHINIVSTCCF--SSDEHMLATGSWDKNIQLWDVATGV 245
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 34.3 bits (75), Expect = 0.098
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 258 WDLAANQTMQ--VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLT 431
WD+ +N + V HD VK+C W +PN + ++S D + W+ R +
Sbjct: 72 WDIRSNSVVMSLVGGHDDRVKSCAW--SPNGEYVASSSADGRVTLWEPRLGTALSKIRAH 129
Query: 432 ERAYCADVEYP 464
E A YP
Sbjct: 130 EDAVTHVEFYP 140
>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 31.9 bits (69), Expect(2) = 0.11
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +3
Query: 258 WDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDT----RTAVPSMTLN 425
WD N ++ H APV+ C + PN + T+ + +K WD R
Sbjct: 176 WDRRCNASVNTLDHGAPVE-CIQV-YPN-GAMAITAGENVIKIWDILSGGRLVTSFSNHQ 232
Query: 426 LTERAYCADVEYPMAVVGTADRGICMY 506
T + C D Y + G+ DR + +Y
Sbjct: 233 KTITSLCFDGAYKRLLSGSIDRNVKVY 259
Score = 21.0 bits (42), Expect(2) = 0.11
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 255 CWDLAANQT 281
CWD+A QT
Sbjct: 149 CWDIATEQT 157
>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTLNLTERA--YCADVEYPMAVVGTADRGICMY 506
L + SWD ++K WD R ++ MT RA C + + + V G D+ + M+
Sbjct: 209 LCSGSWDNSVKVWDLRGSIVEMTSIREHRAAVLCMEWKQDVLVTGCYDKHVRMF 262
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 33.5 bits (73), Expect = 0.17
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +1
Query: 1 PNKDVEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPM- 177
P K ++S P + V+ + +SP F IAGS D ++ C G V + P
Sbjct: 146 PFKFKHLNSEPTNFVNCIGYSPSG----DFFIAGSADGKL-CLYDGKEGNLVAEIVDPAL 200
Query: 178 ----DGPVLDVAWHDDGTKVFMASTDKSVNV 258
G + ++W DD + AS DKS +
Sbjct: 201 KKAHSGGIYGLSWSDDSKFILTASGDKSCKI 231
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 91 LIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
+I+ S+D V+ W+VET + DG V +A DG ++ AS D+++ +
Sbjct: 805 IISSSYDKTVKIWDVETC--AFVNSLDGHDGHVRGIAITSDGRRLVSASQDRTLRI 858
>SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40)
Length = 400
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +3
Query: 231 GFNRQKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVP 410
G+ + + +C +A H + ++T W + +T+S D+TLK WDT
Sbjct: 76 GYYKSRFKCEAVAKVTKTHKGNHRSSIETVQWYPHDS-GMFLTSSVDRTLKVWDTNALQV 134
Query: 411 SMTLNLTERAY 443
T N Y
Sbjct: 135 VETFNFEGIVY 145
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 243 QKCECWDLAANQ-TMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAV 407
Q + WD ++ + + H V +C + +P+ T ++ S D+T+K WD++T V
Sbjct: 574 QTVKIWDASSGEGVLCFVGHTQEVFSCSF--SPDDTKAVSCSADRTVKVWDSKTGV 627
>SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08)
Length = 175
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 91 LIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
++ GS D V ++VE S K PVLDV W+ D + + T+ +V V
Sbjct: 111 VVTGSEDMAVYFFDVERSEKPCVNKLLGHSAPVLDVCWNYDESLLASCDTEGTVIV 166
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 31.1 bits (67), Expect = 0.91
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTMQ-VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WD++ Q ++ H + V C P+ T +++ S+D T++ WD R+
Sbjct: 640 WDVSTGQVIRRYRGHTSRVN-CVKFNQPDSTVIISGSYDSTIRCWDCRS 687
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +1
Query: 43 VSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTK 222
V+ ++F+ P T+ +I+GS+D +RCW+ + + + V V H +
Sbjct: 658 VNCVKFNQPDSTV---IISGSYDSTIRCWDCRSRSQEPVQVIDDAKDSVTSV--HVSSHE 712
Query: 223 VFMASTDKSV 252
+ S D V
Sbjct: 713 ILSGSVDCKV 722
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 43 VSALEFSPPSVTLHTFLIAG-SWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGT 219
V+ L+++P ++T L+A S D VR W+ +G V K+ G V DV W G
Sbjct: 207 VNRLDWNP----VYTNLLASCSMDNSVRVWDTYLNGICV-KSHTFHGGAVKDVKWSPGGM 261
Query: 220 KVFMASTDKS 249
++ DKS
Sbjct: 262 QLLSCGYDKS 271
>SB_13533| Best HMM Match : C1_4 (HMM E-Value=0.66)
Length = 146
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -1
Query: 461 VLHISTVRSLC*IEGHARNCSARVPEL*SFIPGGGHEARVVGRFDPVASLHWSVVR 294
V+++ V S+C + G C VP++ S P AR V R P+ LH VR
Sbjct: 89 VVNVPDVWSMCPMCGQCARCVVNVPDVWSMCPMCSQCARCVARL-PLIDLHLFHVR 143
>SB_57108| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
Length = 243
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTLNLTERA-YCADVEYPMAVVGTADRGI 497
+++ S+DKTLK WD +T +TL A C + V G+ D I
Sbjct: 97 VVSGSYDKTLKVWDIKTGNCKLTLRGHNAAVLCVQFDESKIVSGSYDNTI 146
>SB_37154| Best HMM Match : WD40 (HMM E-Value=7.00649e-45)
Length = 870
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTLNLTERA-YCADVEYPMAVVGTADRGI 497
+++ S+DKTLK WD +T +TL A C + V G+ D I
Sbjct: 724 VVSGSYDKTLKVWDIKTGNCKLTLRGHNAAVLCVQFDESKIVSGSYDNTI 773
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
F ++GSWD +R W++ T D VL VA+ D ++ + D + +
Sbjct: 114 FALSGSWDKTLRLWDLNAGVTTRRFVGHTKD--VLSVAFSADNRQIVSGARDHHIKL 168
>SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTMQ-VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WDL + + + H V + ++ P L+T+S DKTL WD RT
Sbjct: 272 WDLNSERCRYTLRGHADSVNSIVFL--PYSNTLLTSSADKTLSLWDART 318
>SB_59503| Best HMM Match : Peptidase_C27 (HMM E-Value=1.6)
Length = 224
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 324 WIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTERAYCADV 455
W + +C TTS K K RT P+++ + T+ A C DV
Sbjct: 48 WSRCGLLSCPTTTSQAKRRKTPSWRTLAPALSPSATQLAACCDV 91
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 363 SWDKTLKFWDTRTAVPSMTLNLTERAYCADV 455
S DKT++ WD R A+PS ++ A+ ADV
Sbjct: 228 SVDKTIRIWDAR-AMPSKACMISTNAHDADV 257
>SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16)
Length = 301
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 37 DTVSALEFSPPSVTLHTFLIA-GSWDCQVRCWEVETSG 147
D VS++ F P + LH L A G+ D VR W+VET G
Sbjct: 140 DRVSSVRFCPHA--LHPGLCASGADDKTVRLWDVETKG 175
>SB_25576| Best HMM Match : WD40 (HMM E-Value=1.6e-30)
Length = 326
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 324 WIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTL 422
WI P + ++T+S D T+K WD T TL
Sbjct: 67 WIPRPPESVMVTSSEDATVKVWDYETGDFERTL 99
>SB_3382| Best HMM Match : WD40 (HMM E-Value=2.8e-05)
Length = 375
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 255 CWDLAANQTM-QVAAHDAPVKTCHWI-KAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNL 428
C D+ + + + AHD+ + + PN CL+T S D +K WD + PS L
Sbjct: 220 CCDVRTDAPVFTINAHDSAIAGLVLSSQVPN--CLVTASADGNMKVWDIKDNKPSFILTR 277
Query: 429 TERAYCA 449
+ C+
Sbjct: 278 DMQMKCS 284
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 300 DAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVP-SMTLNLTERAYC 446
DA V TC I N +TT+ +KT+ T+T P + TL T + C
Sbjct: 226 DANVPTCILIPPVNPCTPVTTTCEKTISVTKTQTLPPDTCTLTTTSMSTC 275
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 97 AGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
+ S+D VR W+VE G + PV +++ DG + S DK V++
Sbjct: 308 SASYDTTVRLWDVERGG--CLQVLSKHHEPVYTISFSPDGRYLASGSFDKRVHI 359
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTMQVAA-HDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WD+ +QV + H PV T + +P+ L + S+DK + W T+T
Sbjct: 318 WDVERGGCLQVLSKHHEPVYTISF--SPDGRYLASGSFDKRVHIWSTQT 364
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTLNLTERAY-CADVEYPMAVVGTADRGICMY 506
+++ S D+T+K W T T TLN R C + V G++D I ++
Sbjct: 326 IVSASGDRTIKVWSTSTCEFVRTLNGHRRGIACLQYRDRLVVSGSSDNTIRLW 378
>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
Length = 714
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 258 WDLAANQTMQVA-AHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTE 434
W+L + + V H V+ C + +PN L++ S D+T WD P ++ E
Sbjct: 83 WNLETGECLAVLEGHTGAVRVCRF--SPNSQFLISGSADETFIIWDVLLKKPVRCVDKLE 140
Query: 435 RAYCA 449
+ A
Sbjct: 141 SSVTA 145
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 177 GWTGPRCRLA**WDEGFYGFN-RQKCECWDLAANQT 281
GWTG RC A G YGFN C C + + N T
Sbjct: 607 GWTGKRCDQA--CPSGTYGFNCTLPCACVNGSCNAT 640
>SB_29939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 524 AEFKRIESPLKHQHRCVSIFKDKKSKQPTGFA-LGSVEGRVAIQYVNPTNPKDNFTFKCH 700
A ++RI L +H + D+ +Q +G A LG + +Y+ PT P DN F H
Sbjct: 129 AIYQRINIRLVMKHIDIWTNGDRMERQTSGGAELGKFK-EYRTKYITPTIPHDNAQFLSH 187
Query: 701 R 703
+
Sbjct: 188 K 188
>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
Length = 198
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 258 WDLAANQTMQVA-AHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTE 434
W+L + + V H V+ C + +PN L++ S D+T WD P ++ E
Sbjct: 83 WNLETGECLAVLEGHTGAVRVCRF--SPNSQFLISGSADETFIIWDVLLKKPVRCVDKLE 140
Query: 435 RAYCA 449
+ A
Sbjct: 141 SSVTA 145
>SB_14411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 306 PVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTERAYCADV 455
P + W + +C TTS K K RT P+++ + T+ A C DV
Sbjct: 42 PDQNKSWSQCGLLSCPTTTSPAKRRKTPSWRTLAPALSPSATQLAACCDV 91
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 141 SFHFPTSHLAVPAASDQEGVQSDGGRRELEGRHG 40
SF P H V ++ Q+ + SD G E +GRHG
Sbjct: 270 SFTSPIEHQGVISSDHQQDI-SDSGSSEGDGRHG 302
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 129 PTSHLAVPAASDQEGVQSDGGRRELEGRHGVIGRRGN 19
P P G + + G R L G HGV G RG+
Sbjct: 99 PPGPNGAPGRPGVRGPKGESGSRGLPGNHGVQGERGS 135
>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
Length = 865
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 324 WIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTERAYCADVE 458
W + +C TTS K K RT P+++ + T+ A C D++
Sbjct: 810 WSRCGLLSCPTTTSPAKRRKTPSCRTFAPALSPSATQLAACCDLD 854
>SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12)
Length = 490
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 85 TFLIAGSWDCQVRCWEVET 141
TFLI+ WD ++ W++ET
Sbjct: 72 TFLISAGWDRRILLWDLET 90
>SB_55557| Best HMM Match : Tet_res_leader (HMM E-Value=1.9)
Length = 90
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 690 NVKLSLGLVGFTYWMATRPSTLPSAKPVGCLLF 592
+V+L G + T W+ RP+ LP + V C+LF
Sbjct: 25 DVELGNGSIPETLWVIARPTRLP--RSVSCVLF 55
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTL-NLTERAYCADVEYPMAVVGTAD 488
+++ S D+TLK W+ T TL T C D+ + V G+ D
Sbjct: 372 IVSGSTDRTLKVWNAETGYCMHTLYGHTSTVRCMDMHEEVVVSGSRD 418
>SB_30598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 79 LHTFLIAGSWDCQVRCWE-VETSGKTVPKAAQP 174
+HTFL +G+WD ++ + +E ++VP+ P
Sbjct: 56 VHTFLKSGNWDTRIAAGQAIEAIAQSVPQWEPP 88
>SB_26375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 285 QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTERAYCADVEY 461
+V AH C + +P+ L TTS D T++ W T TL+ T + + D +
Sbjct: 193 KVEAHKRYALKCQF--SPDSCLLATTSADTTVRIWQTADFSLKTTLSDTSQRWVWDCAF 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,658,129
Number of Sequences: 59808
Number of extensions: 497168
Number of successful extensions: 1507
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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