Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00168
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 408 PSMTLNLTERAYCADVEYP 464
           P   +N+T + YC D+E P
Sbjct: 314 PGTGINVTLKGYCIDMEVP 332


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 270 LLSPNIHTFVC*SHKNLRPIIMPGDI 193
           + SP +H F   +   L+ ++MP DI
Sbjct: 153 MCSPKLHVFDLNTSHQLKQVVMPHDI 178


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 313 FTGASCAATCIVWLA 269
           F G +   TCI+WLA
Sbjct: 707 FIGFTMYTTCIIWLA 721


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 313 FTGASCAATCIVWLA 269
           F G +   TCI+WLA
Sbjct: 797 FIGFTMYTTCIIWLA 811


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 257 TFTLLSVEAIKTFVPSSCQATSRTGPSI 174
           T  L S   I   +PS C+A S    S+
Sbjct: 13  TVLLFSFVVILLIIPSKCEAVSNDRQSL 40


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 125 HLTWQSQLPAIR 90
           HL W S +P+IR
Sbjct: 470 HLVWNSWMPSIR 481


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 327  SSGKSSLERRAPLPASF 277
            SSG +++   AP+PA F
Sbjct: 1042 SSGAAAMASAAPMPACF 1058


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,765
Number of Sequences: 438
Number of extensions: 4311
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)