Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00168
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 81 5e-16
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 81 5e-16
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 45 4e-05
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 44 1e-04
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 43 2e-04
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 42 5e-04
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 38 0.005
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 38 0.006
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 38 0.006
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 38 0.006
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 37 0.011
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 36 0.020
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 36 0.020
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 35 0.046
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 35 0.060
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 34 0.080
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 34 0.080
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 34 0.080
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 34 0.080
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 34 0.080
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 34 0.11
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 34 0.11
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 33 0.14
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 33 0.24
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 33 0.24
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 33 0.24
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 31 0.56
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 31 0.56
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 31 0.56
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 31 0.56
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 31 0.74
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 31 0.74
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 31 0.74
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 31 0.74
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 31 0.74
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 31 0.74
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 31 0.98
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 31 0.98
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 30 1.3
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 30 1.3
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 30 1.3
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 30 1.3
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 30 1.3
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 30 1.3
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 30 1.7
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 30 1.7
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 29 2.3
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 29 2.3
At1g72550.2 68414.m08390 tRNA synthetase beta subunit family pro... 29 2.3
At1g72550.1 68414.m08389 tRNA synthetase beta subunit family pro... 29 2.3
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 3.0
At2g43500.1 68415.m05405 RWP-RK domain-containing protein low si... 29 3.0
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 29 4.0
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 29 4.0
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 28 5.2
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 28 5.2
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 28 5.2
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 28 5.2
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 28 6.9
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 28 6.9
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 28 6.9
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 28 6.9
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 28 6.9
At3g02110.1 68416.m00177 serine carboxypeptidase S10 family prot... 28 6.9
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 28 6.9
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 28 6.9
At1g19485.1 68414.m02427 AT hook motif-containing protein contai... 28 6.9
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 9.2
At4g38670.1 68417.m05475 pathogenesis-related thaumatin family p... 27 9.2
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 27 9.2
At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family simi... 27 9.2
At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family simi... 27 9.2
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 81.4 bits (192), Expect = 5e-16
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 PNKDVEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTV---PKAAQ 171
PNK EV+ P D++S+L FSP + L+A SWD QVRCWE+ SG ++ PKA+
Sbjct: 14 PNKSYEVTPSPADSISSLSFSPRA----DILVATSWDNQVRCWEISRSGASLASAPKASI 69
Query: 172 PMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
D PVL AW DDGT VF DK +
Sbjct: 70 SHDQPVLCSAWKDDGTTVFSGGCDKQAKM 98
Score = 78.6 bits (185), Expect = 4e-15
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = +3
Query: 225 FYGFNRQKCECWDL-AANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
F G ++ + W L + Q + VA H+ P+ WI P L T SWDKTLK+WDTR
Sbjct: 88 FSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWI--PGMNLLATGSWDKTLKYWDTRQ 145
Query: 402 AVPSMTLNLTERAYCADVEYPMAVVGTADRGICMY 506
P T L ++ Y V++P+ VVGTADR + ++
Sbjct: 146 QNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVF 180
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +2
Query: 527 EFKRIESPLKHQHRCVSIFKDKKSKQPTGFALGSVEGRVAIQYVNPTNPKDNFTFKCHR 703
EFKRI+SPLK+Q RCV+ F D++ GF +GS+EGRV + +++ + NFTFKCHR
Sbjct: 188 EFKRIQSPLKYQTRCVTAFPDQQ-----GFLVGSIEGRVGVHHLDDSQQSKNFTFKCHR 241
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 81.4 bits (192), Expect = 5e-16
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 PNKDVEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTV---PKAAQ 171
PN E++ P D++S+L FSP + L+A SWDCQVRCWE+ S ++ PK +
Sbjct: 15 PNNSYEITPPATDSISSLSFSPKA----DILVATSWDCQVRCWEITRSDGSIASEPKVSM 70
Query: 172 PMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
D PVL AW DDGT VF DK +
Sbjct: 71 SHDQPVLCSAWKDDGTTVFTGGCDKQAKM 99
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 225 FYGFNRQKCECWDLAAN-QTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLK 383
F G ++ + W L + Q VA HDAP WI P L+T SWDKTLK
Sbjct: 89 FTGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQIAWI--PGMNLLVTGSWDKTLK 140
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 533 KRIESPLKHQHRCVSIFKDKKSKQPTGFALGSVEGRVAIQY--VNPTNPKDNFTFKCHR 703
+R ES LK+Q RCV + + TG+AL SVEGRVA+++ ++ + FKCHR
Sbjct: 179 QRRESSLKYQTRCVRCYPNG-----TGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCHR 232
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/71 (38%), Positives = 37/71 (52%)
Frame = +1
Query: 1 PNKDVEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMD 180
P+ E+S+PP D +S L FS S L+ SWD +VR ++V T+ K
Sbjct: 6 PSAGRELSNPPSDGISNLRFSNNS----DHLLVSSWDKRVRLYDVSTNSL---KGEFLHG 58
Query: 181 GPVLDVAWHDD 213
G VLD +HDD
Sbjct: 59 GAVLDCCFHDD 69
Score = 35.5 bits (78), Expect = 0.035
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +3
Query: 288 VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAV-PSMTLNLT----ERAYCAD 452
+ HD V+ + A ++T SWDKT+K WD R A P T T ER Y
Sbjct: 94 LGTHDKAVRCVEYSYAAGQ--VITGSWDKTVKCWDPRGASGPERTQVGTYLQPERVYSMS 151
Query: 453 VEYPMAVVGTADRGICMY 506
+ VV TA R + +Y
Sbjct: 152 LVGHRLVVATAGRHVNIY 169
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 533 KRIESPLKHQHRCVSIFKDKKSKQPTGFALGSVEGRVAIQY--VNPTNPKDNFTFKCHR 703
+R ES LK+Q RCV + + TG+AL SVEGRV++++ ++ + FKCHR
Sbjct: 178 QRRESSLKYQTRCVRCYPNG-----TGYALSSVEGRVSMEFFDLSEAAQAKKYAFKCHR 231
Score = 36.7 bits (81), Expect = 0.015
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +1
Query: 16 EVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLD 195
E+S+PP D +S L FS S L+ SWD VR ++ + + + G VLD
Sbjct: 10 ELSNPPSDGISNLRFSNNS----DHLLVSSWDKSVRLYD---ANGDLMRGEFKHGGAVLD 62
Query: 196 VAWHDDGT 219
+HDD +
Sbjct: 63 CCFHDDSS 70
Score = 34.3 bits (75), Expect = 0.080
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 261 DLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTA 404
D A + + H+ PV+ + A ++T SWDKT+K WD R A
Sbjct: 84 DFNAGKEDVLGTHEKPVRCVEYSYAAGQ--VITGSWDKTIKCWDPRGA 129
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +3
Query: 258 WDLAA-NQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT-AVPSMTLN 425
WD+ TM + AHD + +C W K + L T+S DKT+K WD R+ VP LN
Sbjct: 177 WDVREPGSTMIIPAHDFEILSCDWNKYDD-CILATSSVDKTVKVWDVRSYRVPLAVLN 233
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 97 AGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHD-DGTKVFMASTDKSVNV 258
+ S DC +R W+V G T+ A D +L W+ D + +S DK+V V
Sbjct: 167 SASGDCTLRIWDVREPGSTMIIPAH--DFEILSCDWNKYDDCILATSSVDKTVKV 219
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 354 MTTSWDKTLKFWDTRTAVPSMTLNLTERAYC 446
+T+SWD T+K W P+ E AYC
Sbjct: 123 LTSSWDDTVKLWAMDR--PASVRTFKEHAYC 151
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/84 (33%), Positives = 41/84 (48%)
Frame = +1
Query: 1 PNKDVEVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMD 180
P + V S VSA+ F P H L AG DC+V+ W+V SGK + +
Sbjct: 271 PKRLVHTWSGHTKGVSAIRFFPKQG--HLLLSAGM-DCKVKIWDVYNSGKCM-RTYMGHA 326
Query: 181 GPVLDVAWHDDGTKVFMASTDKSV 252
V D+ + +DG+K A DK++
Sbjct: 327 KAVRDICFSNDGSKFLTAGYDKNI 350
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
F ++GSWD ++R W++ T T D VL VA+ D ++ AS D+++ +
Sbjct: 77 FALSGSWDGELRLWDLATGESTRRFVGHTKD--VLSVAFSTDNRQIVSASRDRTIKL 131
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
F ++GSWD ++R W++ T T D VL VA+ D ++ AS D+++ +
Sbjct: 77 FALSGSWDGELRLWDLATGETTRRFVGHTKD--VLSVAFSTDNRQIVSASRDRTIKL 131
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = +1
Query: 16 EVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLD 195
++ S + V L FSP L L + SWD VR W+V S TV D VL
Sbjct: 471 DILSGHEAPVHGLMFSP----LTQLLASSSWDYTVRLWDVFASKGTVETFRHNHD--VLT 524
Query: 196 VAWHDDGTKVFMASTDKSVN 255
VA+ DG ++ ++ D +N
Sbjct: 525 VAFRPDGKQLASSTLDGQIN 544
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 WDLAANQTMQV-AAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
W Q + + H+APV + +P L ++SWD T++ WD
Sbjct: 462 WSKKTGQIKDILSGHEAPVHGLMF--SPLTQLLASSSWDYTVRLWD 505
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = +1
Query: 16 EVSSPPDDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLD 195
++ S + V L FSP L L + SWD VR W+V S TV D VL
Sbjct: 511 DILSGHEAPVHGLMFSP----LTQLLASSSWDYTVRLWDVFASKGTVETFRHNHD--VLT 564
Query: 196 VAWHDDGTKVFMASTDKSVN 255
VA+ DG ++ ++ D +N
Sbjct: 565 VAFRPDGKQLASSTLDGQIN 584
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 258 WDLAANQTMQV-AAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
W Q + + H+APV + +P L ++SWD T++ WD
Sbjct: 502 WSKKTGQIKDILSGHEAPVHGLMF--SPLTQLLASSSWDYTVRLWD 545
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 225 FYGFNRQKCECWDLAANQTMQVAAH-DAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
+ G N +DL + + V H +PV+ C+W P Y L+++SWD L W+
Sbjct: 417 YTGSNDSSVYIYDLVSGDKVAVLKHHSSPVRDCNW--HPYYPTLISSSWDGDLVKWE 471
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 CECWDLAAN-QTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN 425
C WD+ Q ++ HD V C P ++T S D T+KFWD R TL
Sbjct: 284 CRVWDIRTKMQIFALSGHDNTV--CSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLT 341
Query: 426 LTERAYCADVEYP 464
+++ A +P
Sbjct: 342 HHKKSVRAMTLHP 354
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 336 PNYTCLMTTSWDKTLKFWDTRTAVPSMTL 422
P+ T S D+T+K WD T V +TL
Sbjct: 186 PSNEWFCTGSADRTIKIWDVATGVLKLTL 214
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +3
Query: 249 CECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNL 428
C WD+ + V HD+ V + + P ++T S D T+KFWD R T+
Sbjct: 278 CRVWDIRTKMQIFVLPHDSDVFSV--LARPTDPQVITGSHDSTIKFWDLRYGKSMATITN 335
Query: 429 TERAYCADVEYP 464
++ A +P
Sbjct: 336 HKKTVRAMALHP 347
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 336 PNYTCLMTTSWDKTLKFWDTRTAVPSMTL 422
P+ T S D+T+K WD T V +TL
Sbjct: 180 PSNEWFCTGSADRTIKIWDVATGVLKLTL 208
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 35.1 bits (77), Expect = 0.046
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 231 GFNRQKCECWDLAANQTMQV-AAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTR 398
GF+ +C +DL N + AHD V + AP L+++S DKTL+ WD R
Sbjct: 430 GFSSGQCRLFDLRENGFISSWRAHDGYVTK---LVAPESHLLVSSSLDKTLRIWDLR 483
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 34.7 bits (76), Expect = 0.060
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
F ++GSWD ++R W++ T D VL VA+ D ++ AS D+++ +
Sbjct: 77 FALSGSWDGELRLWDLAAGVSTRRFVGHTKD--VLSVAFSLDNRQIVSASRDRTIKL 131
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 37 DTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEV 135
D VS + FSP TL +++ SWD V+ W +
Sbjct: 151 DWVSCVRFSPN--TLQPTIVSASWDKTVKVWNL 181
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 34.3 bits (75), Expect = 0.080
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 285 QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNL-TERAYCADVEY 461
Q ++H + + C W K+ ++ L++ S+D + WD RTA P ++ ++ AD
Sbjct: 353 QFSSHSSWISACKWHKS-SWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADWWK 411
Query: 462 PMAVV-GTADRGI 497
+VV G AD +
Sbjct: 412 GESVVSGGADSNL 424
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 288 VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTL 422
+ H V + W P + + ++SWD +++ WD T S+ L
Sbjct: 268 LVGHTQCVSSVVW---PEHDVIYSSSWDHSVRRWDVETGKDSLNL 309
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 82 HTFLIAGSWDCQVRCWEVET 141
H + + SWD VR W+VET
Sbjct: 283 HDVIYSSSWDHSVRRWDVET 302
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 34.3 bits (75), Expect = 0.080
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 43 VSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTK 222
V ++F+P T + +GS D ++ W V K + +LD+ W DG++
Sbjct: 56 VYTMKFNPAG----TLIASGSHDREIFLWRVHGDCKNF-MVLKGHKNAILDLHWTSDGSQ 110
Query: 223 VFMASTDKSV 252
+ AS DK+V
Sbjct: 111 IVSASPDKTV 120
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Frame = +1
Query: 91 LIAGSWDCQVRCWEVETSGKTVPKAAQPMD----------GPVLDVAWHDDGT 219
+++ S D VR W+VET GK + K A+ GP L ++ DDGT
Sbjct: 111 IVSASPDKTVRAWDVET-GKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGT 162
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 34.3 bits (75), Expect = 0.080
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +2
Query: 611 GFALGSVEGRVAIQYVNPT-NPKDNFTFKCH 700
G+A+GSV+GRVA+ + N + + + ++F+CH
Sbjct: 191 GYAVGSVDGRVAVDFPNTSCSSEIKYSFRCH 221
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 34.3 bits (75), Expect = 0.080
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +2
Query: 611 GFALGSVEGRVAIQYVNPT-NPKDNFTFKCH 700
G+A+GSV+GRVA+ + N + + + ++F+CH
Sbjct: 191 GYAVGSVDGRVAVDFPNTSCSSEIKYSFRCH 221
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 34.3 bits (75), Expect = 0.080
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WDL A + + + H+ P+++ + P L T S D+T+KFWD T
Sbjct: 118 WDLTAGKLLHEFKCHEGPIRSLDF--HPLEFLLATGSADRTVKFWDLET 164
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 285 QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAV 407
Q ++H + + C W K+ ++ L++ S+D + WD RTAV
Sbjct: 353 QFSSHSSWISACKWHKS-SWFHLLSASYDGKIMLWDLRTAV 392
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 288 VAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTL 422
+ H V + W P + + ++SWD +++ WD T S+ L
Sbjct: 268 LVGHTQCVSSVVW---PEHDVIYSSSWDHSVRRWDVETGKDSLNL 309
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 82 HTFLIAGSWDCQVRCWEVET 141
H + + SWD VR W+VET
Sbjct: 283 HDVIYSSSWDHSVRRWDVET 302
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WDL A + + + +H+ +++ + P+ L T S DKT+KFWD T
Sbjct: 263 WDLTAGKLLHEFKSHEGKIQSLDF--HPHEFLLATGSADKTVKFWDLET 309
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WDL A + + + H+ P+++ + P L T S D+T+KFWD T
Sbjct: 169 WDLTAGKLLHEFKFHEGPIRSLDF--HPLEFLLATGSADRTVKFWDLET 215
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WDL A + + + +H+ +++ + P+ L T S D+T+KFWD T
Sbjct: 170 WDLTAGKLLTEFKSHEGQIQSLDF--HPHEFLLATGSADRTVKFWDLET 216
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 WDLAANQTM-QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
WDL A + + + +H+ +++ + P+ L T S D+T+KFWD T
Sbjct: 170 WDLTAGKLLTEFKSHEGQIQSLDF--HPHEFLLATGSADRTVKFWDLET 216
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 32.7 bits (71), Expect = 0.24
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 34 DDTVSALEFSPPSVTLHTFLIAGSWDCQVRCWEVETSGK--TVPKAAQPMDGPVLDVAWH 207
DD V+A+ S T++T GS D ++R W T K T+ + V +A +
Sbjct: 235 DDAVNAIAVSTNG-TVYT----GSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALN 289
Query: 208 DDGTKVFMASTDKSVNV 258
DDG+ +F S D+S+ V
Sbjct: 290 DDGSVLFSGSCDRSILV 306
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 261 DLAANQTMQVAAHDAPVKTCHW-IKAPNYTCLMTTSWDKTLKFWDTRTAVPS 413
DL T+Q A D V + + I PN L T S DK++K WD PS
Sbjct: 391 DLNPTYTIQAHAQDRGVSSISYNISTPNL--LATGSMDKSVKLWDLSNNEPS 440
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 231 GFNRQKCECWDLAANQTMQVAAHD-APVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAV 407
GF+ ++ +N + + HD A + I APN L T S D+T+K WD
Sbjct: 346 GFDVRQASISASESNPSFTINGHDEAATSVSYNISAPNL--LATGSKDRTVKLWDLSNNE 403
Query: 408 PS 413
PS
Sbjct: 404 PS 405
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 276 QTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMT 419
Q +++ AH V + C++T DKT+K WD T V T
Sbjct: 454 QHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHT 501
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 31.5 bits (68), Expect = 0.56
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 276 QTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMT 419
Q +++ AH V + C++T DKT+K WD T V T
Sbjct: 454 QHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHT 501
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 294 AHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
AH + WIK + CL+T S D+T+K WD
Sbjct: 126 AHYNAIFDISWIKGDS--CLLTASGDQTIKVWD 156
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 336 PNYTCLMTTSWDKTLKFWD 392
PN T L T+S+DKT+K WD
Sbjct: 560 PNSTQLATSSFDKTIKIWD 578
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 243 QKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
Q E W+ N+ M VA H+ + ++P+ + + S DK++K W
Sbjct: 738 QAIELWNTMENKCMTVAGHECVISAL--AQSPSTGVVASASHDKSVKIW 784
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 336 PNYTCLMTTSWDKTLKFWD 392
PN T L T+S+DKT+K WD
Sbjct: 562 PNSTQLATSSFDKTIKIWD 580
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 243 QKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
Q E W+ N+ M VA H+ + ++P+ + + S DK++K W
Sbjct: 740 QAIELWNTMENKCMTVAGHECVISAL--AQSPSTGVVASASHDKSVKIW 786
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 336 PNYTCLMTTSWDKTLKFWD 392
PN T L T+S+DKT+K WD
Sbjct: 562 PNSTQLATSSFDKTIKIWD 580
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 243 QKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
Q E W+ N+ M VA H+ + ++P+ + + S DK++K W
Sbjct: 740 QAIELWNTMENKCMTVAGHECVISAL--AQSPSTGVVASASHDKSVKIW 786
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 336 PNYTCLMTTSWDKTLKFWD 392
PN T L T+S+DKT+K WD
Sbjct: 562 PNSTQLATSSFDKTIKIWD 580
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 243 QKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
Q E W+ N+ M VA H+ + ++P+ + + S DK++K W
Sbjct: 740 QAIELWNTMENKCMTVAGHECVISAL--AQSPSTGVVASASHDKSVKIW 786
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 336 PNYTCLMTTSWDKTLKFWD 392
PN T L T+S+DKT+K WD
Sbjct: 562 PNSTQLATSSFDKTIKIWD 580
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 243 QKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
Q E W+ N+ M VA H+ + ++P+ + + S DK++K W
Sbjct: 740 QAIELWNTMENKCMTVAGHECVISAL--AQSPSTGVVASASHDKSVKIW 786
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 276 QTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMT 419
Q +++ AH V + C+ T DKT+K WD T V T
Sbjct: 454 QHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYT 501
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 276 QTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMT 419
Q +++ AH V + C+ T DKT+K WD T V T
Sbjct: 454 QHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYT 501
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 225 FYGFNRQKCECWDL----AANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
+ G + K CWD+ A N+ Q + C + + T S+D+TL+ WD
Sbjct: 180 YTGSDDCKFSCWDIRDSPADNRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYDETLRVWD 239
Query: 393 TRTAVPSMTLNLT 431
TR+ S LN T
Sbjct: 240 TRSV--SRPLNET 250
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +3
Query: 228 YGFNRQKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTC-LMTTSWDKTLKFWDTRTA 404
YG + CW + ++ + D K I P+ + L T S D+T++ WD +
Sbjct: 118 YGDKCRYLHCWSKGDSFSL-LTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASG 176
Query: 405 VPSMTLNLTERAYCADVEYPMAVVG 479
+ LNL C E P +VG
Sbjct: 177 QCTGVLNLGGEVGCIISEGPWLLVG 201
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +3
Query: 258 WDLAA-NQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN--- 425
W+L + + + AH V + + L+T S D T K WD +T TL+
Sbjct: 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Query: 426 LTERAYCADVEYPMAVVGTAD 488
A C E P+ + G+ D
Sbjct: 230 HNVSAVCFHPELPIIITGSED 250
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +3
Query: 258 WDLAA-NQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN--- 425
W+L + + + AH V + + L+T S D T K WD +T TL+
Sbjct: 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Query: 426 LTERAYCADVEYPMAVVGTAD 488
A C E P+ + G+ D
Sbjct: 230 HNVSAVCFHPELPIIITGSED 250
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +3
Query: 258 WDLAA-NQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLN--- 425
W+L + + + AH V + + L+T S D T K WD +T TL+
Sbjct: 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Query: 426 LTERAYCADVEYPMAVVGTAD 488
A C E P+ + G+ D
Sbjct: 230 HNVSAVCFHPELPIIITGSED 250
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 258 WDLA-ANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNLTE 434
WD+A A + H V+ C N + L+T S+D T+K WD R + +
Sbjct: 163 WDVAGATVISDLLGHKDYVR-CGDCSPVNDSMLVTGSYDHTVKVWDARVHTSNWIAEINH 221
Query: 435 RAYCADVEY 461
DV Y
Sbjct: 222 GLPVEDVVY 230
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +3
Query: 258 WDLAA-NQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTL---N 425
W+L + + + AH V + + L+T S D T K WD +T TL
Sbjct: 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229
Query: 426 LTERAYCADVEYPMAVVGTAD 488
A C E P+ + G+ D
Sbjct: 230 HNVSAVCFHPELPIIITGSED 250
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
F I+GS DC V+ W+ G + + G V ++ D K+ S D SV V
Sbjct: 869 FFISGSTDCLVKIWDPSLRGSELRATLKGHTGTVRAIS--SDRGKIVSGSDDLSVIV 923
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 258 WDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSW-DKTLKFWDTRTAVPSM 416
W+ + M+V D V C I+ + ++ TS D T+K W +VPS+
Sbjct: 648 WEKQTGRLMKVLVGDESVLNC--IQCHPFDSVVATSGIDNTIKIWSPTASVPSI 699
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 91 LIAGSWDCQVRCWEVET--SGKTV--PKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
++ S D +R W+V S V PK A+P PV AW DG ++ D S+ +
Sbjct: 294 VLTSSEDGSLRIWDVNNFLSQTQVIKPKLARPGRVPVTTCAWDRDGKRIAGGVGDGSIQI 353
>At1g72550.2 68414.m08390 tRNA synthetase beta subunit family
protein contains Pfam profiles: PF03484
phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
domain; an isoform contains a non-consensus TG acceptor
splice site at a terminal exon.
Length = 584
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 263 VPTFTLLSVEAIKTFVPSSCQATSRTGPSIGCAAL-GTVFPEVSTSQHLTWQSQLPAIRK 87
+PT+TL + K + TS+ P + CA L G F E + + Q +L +
Sbjct: 93 IPTYTLADISKDKILQMNVKPETSKIRPFVVCAVLRGVTFDEARYNSFIDLQDKLH--QN 150
Query: 86 VCR 78
+CR
Sbjct: 151 ICR 153
>At1g72550.1 68414.m08389 tRNA synthetase beta subunit family
protein contains Pfam profiles: PF03484
phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4
domain; an isoform contains a non-consensus TG acceptor
splice site at a terminal exon.
Length = 598
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 263 VPTFTLLSVEAIKTFVPSSCQATSRTGPSIGCAAL-GTVFPEVSTSQHLTWQSQLPAIRK 87
+PT+TL + K + TS+ P + CA L G F E + + Q +L +
Sbjct: 93 IPTYTLADISKDKILQMNVKPETSKIRPFVVCAVLRGVTFDEARYNSFIDLQDKLH--QN 150
Query: 86 VCR 78
+CR
Sbjct: 151 ICR 153
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 243 QKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
Q E W+++ N+TM + AH+ + + A + + S DK +K W
Sbjct: 884 QSLELWNMSENKTMTLPAHEGLITSLAVSTATG--LVASASHDKLVKLW 930
>At2g43500.1 68415.m05405 RWP-RK domain-containing protein low
similarity to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 947
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +2
Query: 260 GLSSQPNDAGSGARRSSEDLPLDQSAQL 343
GLSS NDA ARRS ED+P D S +L
Sbjct: 696 GLSSLDNDAH--ARRSQEDMPDDTSFKL 721
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 282 MQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
+++ AH V + + C++T DKT+K WD T
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVT 497
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +3
Query: 258 WD-LAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW-----DTRTAVPSMT 419
WD + N+ H+APV + + N + +T+ D +K W +R +
Sbjct: 493 WDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPG 552
Query: 420 LNLTERAYCAD 452
+ T AYCAD
Sbjct: 553 RSCTSMAYCAD 563
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 282 MQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWDTRT 401
+++ AH V + + C++T DKT+K WD T
Sbjct: 458 LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVT 497
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +3
Query: 258 WD-LAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW-----DTRTAVPSMT 419
WD + N+ H+APV + + N + +T+ D +K W +R +
Sbjct: 493 WDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPG 552
Query: 420 LNLTERAYCAD 452
+ T AYCAD
Sbjct: 553 RSCTSMAYCAD 563
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 258 WDLA-ANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
WDL A + AHD V + + P C++T+S D T++ W
Sbjct: 255 WDLVDAKVLSKFRAHDLVVTSVSY--HPKEDCMLTSSVDGTIRVW 297
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 43 VSALEFSPPSVTLHTFLIAGSW-DCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGT 219
V+A+++S T H L+A + D V W V ++ K +A + PV DV W G
Sbjct: 163 VTAIDWS----TSHVHLLASAGLDGAVYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGL 218
Query: 220 KVFMASTD 243
+ D
Sbjct: 219 SLLSCGYD 226
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 91 LIAGSWDCQVRCWEVETSGKTV 156
LI+GS DC +R W++E SG +
Sbjct: 552 LISGSMDCTIRIWDLE-SGNVI 572
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 351 LMTTSWDKTLKFWDTRTAVPSMTL-NLTERAYCADV--EYPMAVVGTADRGI 497
+++ S DKTLK WD T TL T A+C + + M V G+ D +
Sbjct: 86 IVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETV 137
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +3
Query: 213 WDEG--FYGFNRQKCECWDLAANQTMQVAAHDAPVKTCHWIKAPNYTC-LMTTSWDKTLK 383
W +G YG + CW + + + D K I P+ + L T S D+TL+
Sbjct: 118 WVDGNCTYGDKCRYLHCWSKGESFAL-LTQLDGHEKLVSGIALPSGSDKLYTGSKDETLR 176
Query: 384 FWDTRTAVPSMTLNLTERAYCADVEYPMAVVG 479
WD + + L L C E P +VG
Sbjct: 177 VWDCASGQCTGVLKLGGEIGCVLSEGPWLLVG 208
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 345 TCLMTTSWDKTLKFWDT 395
T L + SWD+TLK W T
Sbjct: 178 TLLYSVSWDRTLKIWRT 194
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Frame = +3
Query: 237 NRQKCECWDLA-ANQTM-------QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
NR C W L QTM ++ AH+ + C A Y L T S DKT+K W+
Sbjct: 182 NRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANKY--LATASSDKTVKIWN 239
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 258 WDLAANQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
WDL+ + H+APV + + N + +T+ D +K W
Sbjct: 482 WDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAW 525
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 312 KTCHWIKAPNYTCLMTTSWDKTLKFWD 392
KT ++K + + L+++S D TLK WD
Sbjct: 705 KTVSYVKFVDSSTLVSSSTDNTLKLWD 731
>At3g02110.1 68416.m00177 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase II (CP-MII)
GB:CAA70815 (SP:P08818) [Hordeum vulgare]
Length = 473
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -2
Query: 580 DGDAAVLVLQRRLDALELGGLALQVYMQMPRSAVPTTAIGYSTSAQYALSVRL 422
D D+ VL + R + A GG+ + V+ S VP TA YS A+ +LS +L
Sbjct: 368 DTDSTVLPIYREMIA---GGIRVWVFSGDVDSVVPVTATRYSL-ARLSLSTKL 416
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 88 FLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWH 207
++ +GS D VR WEVET G+ + K Q D ++ VAW+
Sbjct: 437 WIASGSTDGSVRMWEVET-GRCL-KVWQ-FDEAIMCVAWN 473
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = +3
Query: 237 NRQKCECW-DLAANQTM-------QVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFWD 392
+R C W L QTM ++ AH++ + C + +P L T S DKT+K W+
Sbjct: 188 DRGTCYVWRSLCERQTMTEFEPLHKLQAHNSHILKC--LLSPGNKYLATASSDKTVKIWN 245
>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
Pfam profile: PF00730 HhH-GPD superfamily base excision
DNA repair protein; contains Pfam PF02178: AT hook
motif; contains Pfam PF00400: WD domain, G-beta repeat
(5 copies); contains Prosite PS00354: HMG-I and HMG-Y
DNA-binding domain (A+T-hook)
Length = 815
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +1
Query: 628 RGRPRGHPVR--EPDQPQGQ 681
RGRPR HPV EP +P+G+
Sbjct: 212 RGRPRKHPVETTEPKKPRGR 231
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 273 NQTMQVAAHDAPVKTCHWIKAPNYTCLMTTSWDKTLKFW 389
N M + AHD P+++ W NY +++ TLK+W
Sbjct: 156 NFEMILQAHDQPIRSMVWSHNENY--MVSGDDGGTLKYW 192
>At4g38670.1 68417.m05475 pathogenesis-related thaumatin family
protein similar to receptor serine/threonine kinase PR5K
[Arabidopsis thaliana] GI:1235680; contains Pfam profile
PF00314: Thaumatin family
Length = 281
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 293 GARRSSEDLPLDQSAQLHVPHDH 361
G+R+ LPL + +H+PH H
Sbjct: 257 GSRKDGATLPLVNKSMIHLPHPH 279
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +1
Query: 85 TFLIAGSWDCQVRCWEVETSGKTVPKAAQPMDGPVLDVAWHDDGTKVFMASTDKSVNV 258
+ L AG D W+ ET G + V+W G ++ +++ DKS+ +
Sbjct: 36 SLLAAGCADGGCVIWDFETRGIAKEIRDNDCSAAITSVSWSKYGHRLLVSAADKSLTL 93
>At3g08840.3 68416.m01027 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 845
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3
Query: 126 TSHLAVPAASDQEGVQSDGGRRELEGRHGVIGRRGNLHVL 7
T + V + + Q+ + G RR +E GVIG+RG++H L
Sbjct: 780 TDEIIVSSKAKQQ-LSWKGRRRWVEMTVGVIGKRGSMHSL 818
>At3g08840.2 68416.m01026 D-alanine--D-alanine ligase family similar
to D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase)
(Swiss-Prot:O51218) [Borrelia burgdorferi]; similar to
D-alanine--D-alanine ligase (EC 6.3.2.4)
(D-alanylalanine synthetase) (D-Ala-D-Ala ligase).
(Swiss-Prot:P95803) [Streptococcus mutans]
Length = 937
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3
Query: 126 TSHLAVPAASDQEGVQSDGGRRELEGRHGVIGRRGNLHVL 7
T + V + + Q+ + G RR +E GVIG+RG++H L
Sbjct: 780 TDEIIVSSKAKQQ-LSWKGRRRWVEMTVGVIGKRGSMHSL 818
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,815
Number of Sequences: 28952
Number of extensions: 344251
Number of successful extensions: 1340
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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