Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00167
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    76   5e-15
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    73   3e-14
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    40   3e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    33   0.060
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    31   0.18 
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      28   1.3  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   3.0  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   3.0  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.9  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   5.2  
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces...    26   6.9  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   6.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   9.1  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 36/91 (39%), Positives = 59/91 (64%)
 Frame = +3

Query: 237 IQSECDHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 416
           ++SE +   Q   +P       ++ +I   +++L A++K N +A  +  FL K+ DV   
Sbjct: 35  LKSEVEE-EQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFID 93

Query: 417 YFGKISEENIKNNFVLIYELLDEILDFGYPQ 509
           YF ++ EE+I++NFVL+YELLDEI+DFG+PQ
Sbjct: 94  YFKELQEESIRDNFVLVYELLDEIMDFGFPQ 124



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 25/62 (40%), Positives = 39/62 (62%)
 Frame = +2

Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
           P  ++T +L+ +ITQ    S + ++ A     +T  I WR E I YR+NE+FLDV+E V+
Sbjct: 123 PQTTETKILQEYITQT---SNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVN 179

Query: 683 LL 688
           L+
Sbjct: 180 LI 181



 Score = 34.3 bits (75), Expect = 0.020
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 145 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 240
           M   +FV N KG+V+ISR YR DI  + V+ F
Sbjct: 1   MASAIFVLNLKGKVIISRDYRADIPMSVVEKF 32


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 30/79 (37%), Positives = 52/79 (65%)
 Frame = +3

Query: 273 RSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKN 452
           R P+ +I  +++ + K  ++++ A+TK N N  +V EFL  +I  +  YFGK++E  +K+
Sbjct: 43  RHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKD 102

Query: 453 NFVLIYELLDEILDFGYPQ 509
           N   I+ELLDE++D+G  Q
Sbjct: 103 NVSFIFELLDEMIDYGIIQ 121



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 17/46 (36%), Positives = 32/46 (69%)
 Frame = +2

Query: 557 KSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVHLLMS 694
           +S S +     +S++ G + WRR  IKYR+N +++D++E ++LL+S
Sbjct: 148 RSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSIYIDIVERMNLLIS 193



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +1

Query: 145 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
           MI GLF++N KG+ LI + +R D+ ++  + FRV ++
Sbjct: 1   MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL 37


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 15/59 (25%), Positives = 35/59 (59%)
 Frame = +3

Query: 327 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 503
           ++ L   T  +     + + + +I+DV++++FG  +   ++ N  +I +LL E++D+GY
Sbjct: 66  DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGY 124



 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 611 IGWRRESIKYRRNELFLDVLEYVHLLMSPQVKCSLLT 721
           + WR    KY  NE F+ VLE V  +  P  K +  T
Sbjct: 164 VPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAFGT 200


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 16/86 (18%), Positives = 37/86 (43%)
 Frame = +3

Query: 234 RIQSECDHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 413
           RI        Q+ ++       +   + + A ++         N   + E +   ++++ 
Sbjct: 34  RIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILD 93

Query: 414 SYFGKISEENIKNNFVLIYELLDEIL 491
           S+FG + E ++  NF  +  +LDEI+
Sbjct: 94  SFFGNVCELDLIFNFYKVSAILDEII 119


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 489 RSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 349
           RS  AT +S++S S   +  S   T  S+   ++ TQ+ WP +H  L
Sbjct: 727 RSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/46 (26%), Positives = 29/46 (63%)
 Frame = +3

Query: 312 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 449
           +I+  N  + +  +++ + A++ E   +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 226 AVDAFRVNVIMLASRCDHL-LPTLHAHLSSISSVQIFGWQ 342
           A+  F    +M+A   D L + T+H HL  ++S +++ WQ
Sbjct: 413 AISGFGGASLMIALISDFLSVMTIHIHLLYLASSRLYNWQ 452


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 253 IMLASRCDHLLPTLHAHLSSISSVQIFGWQQSQSKM*TR 369
           + +  RC  +  +L  H+S + SV +  W   Q++  TR
Sbjct: 46  VFICIRCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR 84


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 87  SLNSNYIETNFERV*GLTYNDRRLVRLQP 173
           S + N +E+N E+V GL  ND  ++ L+P
Sbjct: 77  SSSLNTMESNIEKVNGLFPNDNSVIALKP 105


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 350 CDCCQPNICTLDMEERCACNVGNR 279
           C C    +C L +E  C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698


>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +3

Query: 405 VMQSYFGKISEENIKNNFVLIYELLDEILDFG 500
           V++++ G+I+++  ++  V+IY + D  L FG
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFG 144


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +1

Query: 61  YVKFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 234
           +V ++ G  R I + L P+L      PT+      +NH G++ + R  +   G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 279  VIAPAGEHDHIHSECVHSITTNIISVDSRD 190
            V    GE++ I  + VHS+ T++  V  RD
Sbjct: 1765 VFKSCGENNFIDKDVVHSVYTHVWRVSIRD 1794


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 271 CDHLLPTLHAHLSSISSVQIF 333
           CD L+  LHA L   SSV +F
Sbjct: 118 CDRLVRQLHASLEDASSVGLF 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,423
Number of Sequences: 5004
Number of extensions: 64615
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)