Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00167
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 85 4e-17
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 85 8e-17
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 83 2e-16
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 80 2e-15
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 59 4e-09
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 35 0.063
02_05_0128 - 26059348-26059437,26059553-26059759 31 1.3
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 29 4.1
06_01_0212 - 1611855-1611941,1613447-1613521,1613603-1613665,161... 29 5.4
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 29 5.4
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 28 7.2
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 85.4 bits (202), Expect = 4e-17
Identities = 37/82 (45%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 QVRSPVTNI-ARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 443
+V SPV + A S+ I+ N++L ++QN NAA + FL +++DV + YF ++ EE+
Sbjct: 48 EVLSPVVHDDAGVSYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEES 107
Query: 444 IKNNFVLIYELLDEILDFGYPQ 509
+++NFV++YELLDE++DFGYPQ
Sbjct: 108 LRDNFVVVYELLDEMMDFGYPQ 129
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 84.6 bits (200), Expect = 8e-17
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Frame = +3
Query: 279 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 455
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFLYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 456 FVLIYELLDEILDFGYPQIL 515
FVLIYELLDEI+DFGYPQ L
Sbjct: 109 FVLIYELLDEIMDFGYPQNL 128
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 5/69 (7%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRRESIKYRRNELFLDV 667
P N +LK +ITQ+G++S +SK + T QVTG +GWRRE + Y++NE+FLD+
Sbjct: 125 PQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEVFLDI 184
Query: 668 LEYVHLLMS 694
+E V+LLMS
Sbjct: 185 VESVNLLMS 193
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +1
Query: 139 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
P ++ N +G+VLI+R+YRDD+G N VDAFR++++
Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIM 40
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/82 (42%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 QVRSPVT-NIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 443
+ SPV + A ++ I+ N++L ++QN NAA + FL +++DV + YF ++ EE+
Sbjct: 47 EAHSPVVYDDAGVTYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEES 106
Query: 444 IKNNFVLIYELLDEILDFGYPQ 509
+++NFV++YELLDE++DFGYPQ
Sbjct: 107 LRDNFVVVYELLDEMMDFGYPQ 128
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
P ++ +L FI + E + VT + WR E I+Y++NE+FLDV+E V+
Sbjct: 127 PQYTEAKILSEFIKTDAYRM---EVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVN 183
Query: 683 LLMS 694
+L++
Sbjct: 184 ILVN 187
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 80.2 bits (189), Expect = 2e-15
Identities = 31/77 (40%), Positives = 53/77 (68%)
Frame = +3
Query: 279 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 458
PV N+ ++ H+K A ++ T NV+ +++ E L +I V + Y G ++E++++ NF
Sbjct: 49 PVFNVDGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNF 108
Query: 459 VLIYELLDEILDFGYPQ 509
+L+YELLDE++DFGYPQ
Sbjct: 109 ILVYELLDEVIDFGYPQ 125
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 58.8 bits (136), Expect = 4e-09
Identities = 23/50 (46%), Positives = 38/50 (76%)
Frame = +3
Query: 357 NVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 506
+VN F+FL ++ DV+ Y G ++E+ IK+NFVL+Y++LDE++D G+P
Sbjct: 91 SVNMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFP 140
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 324 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 500
A+++ N V E + ++V+ YFG + E ++ NF Y +LDEIL G
Sbjct: 174 ASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 232
>02_05_0128 - 26059348-26059437,26059553-26059759
Length = 98
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 121 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIMLASRCDHLLPTL 294
KE E +GGL + E I DD+G++ V++FR V +LA + L L
Sbjct: 27 KELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLAKSVRNTLQNL 84
>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 121 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIMLASRC 273
KEC P M +FV G + + Y + GRNA+ + AS C
Sbjct: 884 KECADKPWMPITVFVVEKTGGLRVFTKYGKEYGRNAIQVLFDGCMKAASGC 934
>06_01_0212 -
1611855-1611941,1613447-1613521,1613603-1613665,
1613745-1613810,1614133-1614202,1614513-1614683,
1615504-1615604,1616140-1616187,1616575-1616683,
1617092-1617248,1617372-1617521,1618262-1618380,
1618841-1619061
Length = 478
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 282 QVIAPAGEHDHIHSECVH-SITTNI-ISVDSRDQHLAFMVVNEQASDHCR*GLTLFQ 118
QV+ P+G +DH H+ H I +N+ + +R +HL + + D CR L F+
Sbjct: 322 QVVQPSGRNDHQHASVPHRGIGSNVPVCTANRPRHLDNIC---KTPDECRDDLFKFK 375
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 267 AGEHDHIHSE-CVHSITTNIISVDSRDQHLAFMVVNEQAS 151
+GEH H H + SI T ++++D D H A V E+ S
Sbjct: 943 SGEHGHSHHRLLLESIATRVVTLDG-DHHGAAAAVRERLS 981
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/56 (19%), Positives = 30/56 (53%)
Frame = +3
Query: 324 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 491
A+++ + N + EF+ +++ M +FG + E +I + ++ +L+E++
Sbjct: 64 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,837,762
Number of Sequences: 37544
Number of extensions: 428661
Number of successful extensions: 918
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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