Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00167
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)    153   2e-37
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         74   1e-13
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)                   31   1.4  
SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)    30   1.8  
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   7.3  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score =  153 bits (370), Expect = 2e-37
 Identities = 66/85 (77%), Positives = 78/85 (91%)
 Frame = +3

Query: 255 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 434
           HAR Q+RSPVTNIARTSFFHI++ N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK++
Sbjct: 38  HARGQIRSPVTNIARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVT 97

Query: 435 EENIKNNFVLIYELLDEILDFGYPQ 509
           EE IKNNFVLIYELLDEI D+GYPQ
Sbjct: 98  EEGIKNNFVLIYELLDEIADYGYPQ 122



 Score =  114 bits (275), Expect = 6e-26
 Identities = 52/66 (78%), Positives = 60/66 (90%)
 Frame = +2

Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
           P  +DT +LKTFITQQG+K+ ++EEQAQITSQVTGQIGWRR+ IKYRRNELFLDVLE V+
Sbjct: 121 PQKTDTAILKTFITQQGVKTQTREEQAQITSQVTGQIGWRRDGIKYRRNELFLDVLESVN 180

Query: 683 LLMSPQ 700
           LLMSPQ
Sbjct: 181 LLMSPQ 186



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +1

Query: 145 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
           MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNVI
Sbjct: 1   MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNVI 37



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +1

Query: 703 QVLSAHVAGEVVMKSYLSGM 762
           QVLSAHV+G VVMKS+LSGM
Sbjct: 188 QVLSAHVSGRVVMKSFLSGM 207


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 29/58 (50%), Positives = 45/58 (77%)
 Frame = +3

Query: 336 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 509
           +   TK+N N A++F FL +++ V   YF ++ EE+I++NFV+IYEL+DE++DFGYPQ
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQ 69



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/64 (40%), Positives = 43/64 (67%)
 Frame = +2

Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
           P  ++T +L+ +ITQ+G K    E   +    +T  + WR ++IKYR+NE+FLDV+E V+
Sbjct: 68  PQFTETKILQEYITQEGHKL---ELAPKPPPALTNAVSWRGDNIKYRKNEVFLDVIESVN 124

Query: 683 LLMS 694
           L++S
Sbjct: 125 LMVS 128


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 396 IIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 509
           + ++ + Y G I+EE IK N  LIYELLDE+LDFGY Q
Sbjct: 18  VCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGYVQ 55


>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
          Length = 1033

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +2

Query: 542 TQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVHLLMSPQVKCSLLT 721
           T  G  +AS E++A++   +T +  + + ++      + ++VL+Y HLL+ P+V   L  
Sbjct: 337 TLDGFDAASAEDRARMG--LTFE--YFKTTVDLEAERVDIEVLKYTHLLLRPRVALLLGL 392

Query: 722 W---LGKW 736
           W    GKW
Sbjct: 393 WHRISGKW 400


>SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)
          Length = 851

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 521 QYQNLRVTKVQDLIKQLIDQNKVILDVLFRN 429
           Q++N  V + QDLIKQL ++ ++ L V F N
Sbjct: 135 QHENTEVLRCQDLIKQLAEKYELPLKVGFNN 165


>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 428 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 336
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 732 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 763


>SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 759 PGQI*LHDHFPSHVSREHLTCGDINKWTYSST 664
           PG+I   +H P  + RE    G    WTYS T
Sbjct: 189 PGKIPGREHIPMDLLREKTRYGSTYPWTYSGT 220


>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 428 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 336
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 280 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 311


>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 712

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = +3

Query: 345 VTKQNVNAAMVFEFLLKIIDVMQSY--FGKISE-ENIKNNFVLIYELLDEILDFGYPQIL 515
           VT +  N   V  F+L++I  + S+   G +S+ +NI + FV++  + + +L+ GY ++ 
Sbjct: 227 VTLEKTNIVFVTIFVLEMIINVISFGIMGYLSQLQNIFDGFVVVLSVTELLLENGYARLS 286

Query: 516 I 518
           +
Sbjct: 287 V 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,161,991
Number of Sequences: 59808
Number of extensions: 502373
Number of successful extensions: 1248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)