Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00167
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 159 2e-39
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 159 2e-39
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 157 1e-38
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 88 7e-18
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 88 7e-18
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 81 6e-16
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 60 2e-09
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 40 0.003
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC024777-3|AAF60562.3| 563|Caenorhabditis elegans Hypothetical ... 29 4.8
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 28 8.5
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 159 bits (386), Expect = 2e-39
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +3
Query: 255 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 434
HARQQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++
Sbjct: 38 HARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLN 97
Query: 435 EENIKNNFVLIYELLDEILDFGYPQ 509
EEN+KNNFVLIYELLDEILDFGYPQ
Sbjct: 98 EENVKNNFVLIYELLDEILDFGYPQ 122
Score = 118 bits (283), Expect = 6e-27
Identities = 53/66 (80%), Positives = 62/66 (93%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
P N+D GVLKTFITQQG+++A+KEEQ+QITSQVTGQIGWRRE IKYRRNELFLDV+EYV+
Sbjct: 121 PQNTDPGVLKTFITQQGVRTATKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVN 180
Query: 683 LLMSPQ 700
LLM+ Q
Sbjct: 181 LLMNQQ 186
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 145 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVI
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVI 37
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1
Query: 703 QVLSAHVAGEVVMKSYLSGM 762
QVLSAHVAG+V MKSYLSGM
Sbjct: 188 QVLSAHVAGKVAMKSYLSGM 207
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 159 bits (386), Expect = 2e-39
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +3
Query: 255 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 434
HARQQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++
Sbjct: 38 HARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLN 97
Query: 435 EENIKNNFVLIYELLDEILDFGYPQ 509
EEN+KNNFVLIYELLDEILDFGYPQ
Sbjct: 98 EENVKNNFVLIYELLDEILDFGYPQ 122
Score = 109 bits (262), Expect = 2e-24
Identities = 53/72 (73%), Positives = 62/72 (86%), Gaps = 6/72 (8%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGQIGWRRESIKYRRNELFLD 664
P N+D GVLKTFITQQG+++A +KEEQ+QITSQVTGQIGWRRE IKYRRNELFLD
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 665 VLEYVHLLMSPQ 700
V+EYV+LLM+ Q
Sbjct: 181 VIEYVNLLMNQQ 192
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 145 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVI
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVI 37
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1
Query: 703 QVLSAHVAGEVVMKSYLSGM 762
QVLSAHVAG+V MKSYLSGM
Sbjct: 194 QVLSAHVAGKVAMKSYLSGM 213
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 157 bits (380), Expect = 1e-38
Identities = 69/85 (81%), Positives = 78/85 (91%)
Frame = +3
Query: 255 HARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKIS 434
HARQQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVF FL + D MQSYFGK++
Sbjct: 38 HARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLN 97
Query: 435 EENIKNNFVLIYELLDEILDFGYPQ 509
EEN+KNNFVLIYELLDEILDFGYPQ
Sbjct: 98 EENVKNNFVLIYELLDEILDFGYPQ 122
Score = 109 bits (262), Expect = 2e-24
Identities = 53/72 (73%), Positives = 62/72 (86%), Gaps = 6/72 (8%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGQIGWRRESIKYRRNELFLD 664
P N+D GVLKTFITQQG+++A +KEEQ+QITSQVTGQIGWRRE IKYRRNELFLD
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 665 VLEYVHLLMSPQ 700
V+EYV+LLM+ Q
Sbjct: 181 VIEYVNLLMNQQ 192
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/37 (91%), Positives = 36/37 (97%)
Frame = +1
Query: 145 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVI
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVI 37
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1
Query: 703 QVLSAHVAGEVVMKSYLSGM 762
QVLSAHVAG+V MKSYLSGM
Sbjct: 194 QVLSAHVAGKVAMKSYLSGM 213
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 87.8 bits (208), Expect = 7e-18
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = +3
Query: 276 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 455
+PV T+F IK NI+L + + NVN M+ FL K ++V YF + EE++++N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 456 FVLIYELLDEILDFGYPQ 509
FV+IYELLDE++DFG+PQ
Sbjct: 107 FVVIYELLDEMMDFGFPQ 124
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
P +++ +L+ +ITQ+G K S VT + WR E IKYR+NE+FLDV+E V+
Sbjct: 123 PQTTESRILQEYITQEGQKLISAPRPPMA---VTNAVSWRSEGIKYRKNEVFLDVIESVN 179
Query: 683 LLMS 694
+L S
Sbjct: 180 MLAS 183
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 157 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIM 258
+F+ + KG+ +ISR YR DI A+D F ++++M
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLM 38
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 87.8 bits (208), Expect = 7e-18
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = +3
Query: 276 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 455
+PV T+F IK NI+L + + NVN M+ FL K ++V YF + EE++++N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 456 FVLIYELLDEILDFGYPQ 509
FV+IYELLDE++DFG+PQ
Sbjct: 107 FVVIYELLDEMMDFGFPQ 124
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
P +++ +L+ +ITQ+G K S VT + WR E IKYR+NE+FLDV+E V+
Sbjct: 123 PQTTESRILQEYITQEGQKLISAPRPPMA---VTNAVSWRSEGIKYRKNEVFLDVIESVN 179
Query: 683 LLMS 694
+L S
Sbjct: 180 MLAS 183
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +1
Query: 157 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIM 258
+F+ + KG+ +ISR YR DI A+D F ++++M
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLM 38
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 81.4 bits (192), Expect = 6e-16
Identities = 36/78 (46%), Positives = 52/78 (66%)
Frame = +3
Query: 276 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 455
SPV S+ +IK N++L ++K+N N +V L KI++V YF + EE +++N
Sbjct: 47 SPVLVHQGISYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDN 106
Query: 456 FVLIYELLDEILDFGYPQ 509
FV+IYEL DE+LDFGYPQ
Sbjct: 107 FVIIYELFDEMLDFGYPQ 124
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/66 (42%), Positives = 43/66 (65%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
P +++ +L+ FITQQG ++ E + VT + WR E IKYR+NE+FLDV+E V+
Sbjct: 123 PQTTESKILQEFITQQG----NRLETVRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVN 178
Query: 683 LLMSPQ 700
+L + Q
Sbjct: 179 MLANAQ 184
Score = 34.3 bits (75), Expect = 0.098
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 148 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 240
I GLF+ + KG V+ISR YR D+ + ++ F
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKF 33
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/78 (33%), Positives = 45/78 (57%)
Frame = +3
Query: 279 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 458
P+ + ++ + N++L AV MV EFL ++I YF + S+ ++K N
Sbjct: 47 PIISTPHHYLINVYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENC 106
Query: 459 VLIYELLDEILDFGYPQI 512
V+++ELLDE+LD G+P +
Sbjct: 107 VMVFELLDEMLDNGFPLV 124
Score = 35.5 bits (78), Expect = 0.042
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +2
Query: 602 TGQIG---WRRESIKYRRNELFLDVLEYVHLLMSPQ 700
TGQ+ WRR+ +KY NE + DV+E + +++ Q
Sbjct: 159 TGQLSNIPWRRQGVKYTNNEAYFDVIEEIDVIVDKQ 194
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 324 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 491
A+++ +QN N + E + + ++++ YFG + E +I NF Y +LDE L
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 118
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 327 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFGY 503
NI+L VT +N N E L + V+ Y E+ I ++F LI+ DE++ GY
Sbjct: 69 NIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIF-AFDEVVTLGY 127
>AC024777-3|AAF60562.3| 563|Caenorhabditis elegans Hypothetical
protein Y42H9AR.3 protein.
Length = 563
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 220 RNAVDAFRVN-VIMLASRCDHLLPTLHAHLSSISSVQIFGWQQS 348
R A D RVN +M S L H+HL+S SSV FG S
Sbjct: 446 RRAKDFARVNRTVMKMSSSMPQLQEQHSHLNSTSSVSSFGGPSS 489
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 363 NAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEI 488
N E + ++V+ YF + E ++ NF +Y ++DE+
Sbjct: 76 NNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,852,302
Number of Sequences: 27780
Number of extensions: 375698
Number of successful extensions: 1049
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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