Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00167
(771 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 83 1e-16
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 83 2e-16
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 83 2e-16
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 83 2e-16
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 82 5e-16
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 82 5e-16
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 64 1e-10
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 36 0.030
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 34 0.12
At5g23700.1 68418.m02778 hypothetical protein 31 0.84
At4g33140.1 68417.m04721 expressed protein 29 2.6
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 2.6
At5g40480.1 68418.m04909 expressed protein ; expression supporte... 29 4.5
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 29 4.5
At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containi... 29 4.5
At5g19740.1 68418.m02347 peptidase M28 family protein ileal pept... 28 5.9
At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot... 28 5.9
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 28 7.9
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 83.4 bits (197), Expect = 1e-16
Identities = 34/81 (41%), Positives = 57/81 (70%)
Frame = +3
Query: 267 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 446
Q PV ++ ++ +NI+L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 447 KNNFVLIYELLDEILDFGYPQ 509
++NFV++YELLDE++DFGYPQ
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/32 (46%), Positives = 26/32 (81%)
Frame = +2
Query: 599 VTGQIGWRRESIKYRRNELFLDVLEYVHLLMS 694
VT + WR E +K+++NE+FLDV+E V++L++
Sbjct: 155 VTNSVSWRSEGLKFKKNEVFLDVIESVNILVN 186
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Frame = +3
Query: 279 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 455
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 456 FVLIYELLDEILDFGYPQIL 515
FVLIYELLDEI+DFGYPQ L
Sbjct: 109 FVLIYELLDEIMDFGYPQNL 128
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRRESIKYRRNELFLDV 667
P N +LK +ITQ+G++S +SK + + T QVTG +GWRRE + Y++NE+FLD+
Sbjct: 125 PQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVFLDI 184
Query: 668 LEYVHLLMS 694
+E V+LLMS
Sbjct: 185 VESVNLLMS 193
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 139 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
P ++ N +G+VLI+R YRDD+G N VDAFR +++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIM 40
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Frame = +3
Query: 279 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG-KISEENIKNN 455
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 456 FVLIYELLDEILDFGYPQIL 515
FVLIYELLDEI+DFGYPQ L
Sbjct: 109 FVLIYELLDEIMDFGYPQNL 128
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRRESIKYRRNELFLDV 667
P N +LK +ITQ+G++S +SK + + T QVTG +GWRRE + Y++NE+FLD+
Sbjct: 125 PQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVFLDI 184
Query: 668 LEYVHLLMS 694
+E V+LLMS
Sbjct: 185 VESVNLLMS 193
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 139 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 255
P ++ N +G+VLI+R YRDD+G N VDAFR +++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIM 40
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 83.0 bits (196), Expect = 2e-16
Identities = 33/81 (40%), Positives = 57/81 (70%)
Frame = +3
Query: 267 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 446
Q PV ++ ++ +N++L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 447 KNNFVLIYELLDEILDFGYPQ 509
++NFV++YELLDE++DFGYPQ
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +2
Query: 503 PSNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRRESIKYRRNELFLDVLEYVH 682
P ++ +L FI + E + VT + WR E I+Y++NE+FLDV+E V+
Sbjct: 126 PQYTEARILSEFIKTDAYRM---EVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIENVN 182
Query: 683 LLMS 694
+L++
Sbjct: 183 ILVN 186
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 81.8 bits (193), Expect = 5e-16
Identities = 32/77 (41%), Positives = 54/77 (70%)
Frame = +3
Query: 279 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 458
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 459 VLIYELLDEILDFGYPQ 509
VL+YELLDE++DFGY Q
Sbjct: 110 VLVYELLDEVIDFGYVQ 126
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 81.8 bits (193), Expect = 5e-16
Identities = 32/77 (41%), Positives = 54/77 (70%)
Frame = +3
Query: 279 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 458
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 459 VLIYELLDEILDFGYPQ 509
VL+YELLDE++DFGY Q
Sbjct: 110 VLVYELLDEVIDFGYVQ 126
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/66 (40%), Positives = 43/66 (65%)
Frame = +3
Query: 309 FHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEI 488
F I R I A ++ + M EFL ++ DV+ Y G ++E+ IK+NF+++YELLDE+
Sbjct: 58 FQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEM 117
Query: 489 LDFGYP 506
+D G+P
Sbjct: 118 IDNGFP 123
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 324 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 500
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 324 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG 500
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 31.1 bits (67), Expect = 0.84
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 266 LASMITFTLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 117
+ +T ++ST RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 112 ITEQVTSVRSSSTG-RPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At4g33140.1 68417.m04721 expressed protein
Length = 353
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = -1
Query: 588 IWACSSLEADLMPC*VMNVFRTPVSEFEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIA 409
IW CS EADL V F+T + + P +H+ H+ + Y S+ S QN I
Sbjct: 191 IWNCSRNEADLR---VHEFFKTSYFKKGIHPLPGAHKTLHKLSK-YCDMSVVTSRQNAIK 246
Query: 408 SH 403
H
Sbjct: 247 EH 248
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -2
Query: 494 VQDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNIC 324
V+DL+++L +D N L++L + H+ Q L+ G+V +LL C C
Sbjct: 844 VEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSC 903
Query: 323 TLDMEER 303
T ++ +
Sbjct: 904 TYGLQNQ 910
>At5g40480.1 68418.m04909 expressed protein ; expression supported by
MPSS
Length = 1919
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 172 HKGEVLISRVYRDDIGRNAVDAFRVNVIMLASRCDHLLPTLHA 300
+KG + IS + RDD G ++VNV+ D ++ TL A
Sbjct: 1757 NKGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPA 1799
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 297 VQCW*QVIAPAGEHD--HIHSECVHSITTNIISVDSRDQHLAFMVVNEQ 157
V+C + AP + H+H+ C H + T ++ + + HL M E+
Sbjct: 64 VRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112
>At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 623
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 509 NSDTGVLKTFITQQGIKSASKEEQAQITSQ--VTGQIGWRRESIKYRRNELFLDVLEYVH 682
+S+ VL +FIT +K S E ++ + V G I W Y +N L DVLE
Sbjct: 188 DSEVAVLNSFITMY-MKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYE 246
Query: 683 LLMSPQV 703
+ S V
Sbjct: 247 QMKSSGV 253
>At5g19740.1 68418.m02347 peptidase M28 family protein ileal
peptidase I100 - Rattus norvegicus, EMBL:AF009921;
contains Pfam profiles PF04389: Peptidase family M28,
PF02225: PA domain
Length = 681
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 169 NHKGEVLISR---VYRDDIGRNAVDAFRVNVIMLASRCDH 279
N G V+I+R +YR DI +NA +A V V++ + D+
Sbjct: 166 NVSGAVVIARYGQIYRGDIVKNAYEAGAVGVVIYTDKRDY 205
>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 481
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 228 CGRIQSE-CDHARQQVRSPVTNIARTSFFHIKRAN 329
C ++ +E C+HA Q R P+ I + FF RAN
Sbjct: 418 CRKLSAEACEHAVQNERLPMRVIVQVLFFEQIRAN 452
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = -2
Query: 509 LRVTKVQDLIKQLI-DQNKVILDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQP 333
+R + + +++QLI D V+ + NLA + L + + K + L+CD
Sbjct: 567 IRDSLILSIVQQLIEDSATVVREAAAHNLALL-LPLFPNTDKYFKVEEMMFQLICDPSGL 625
Query: 332 NI-CTLDMEERCACNVGNR*SHLLASMITFTLNASTALRPIS 210
+ TL GNR H+L +++ TL+++ P+S
Sbjct: 626 VVETTLKELLPAVIKWGNRLDHILRGLLSHTLSSAQHCPPLS 667
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,333
Number of Sequences: 28952
Number of extensions: 342866
Number of successful extensions: 801
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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