Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00166
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    25   0.58 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.76 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   1.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.4  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 166 PRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPPRQRRSF 297
           PR   R  ++  SDS ++S + D   R+  + +   P  +R  F
Sbjct: 123 PRTASRETKSSESDSGASSADPDDELRSSSAFSYIKPSSERDYF 166


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 31  CNMD-RTDDLCVTFQRVLETCVQDHDYNLTVATNED 135
           C M+  +D +CVTF  +   CV+  D    +   E+
Sbjct: 145 CTMEINSDTMCVTFSNLGIQCVKKKDIESALRLREE 180


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 310 NESISNSARTGRTLTVSVTVNQSSRNIGW 396
           NE+ +N      T+TV+ TV      + W
Sbjct: 121 NENTTNCPEQKNTVTVTFTVQSDDTTLNW 149


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 451 LLHFTGTDMSFSNFICHLPSRYFG 380
           ++H    D +F N   H P+ Y+G
Sbjct: 430 MMHRPPGDPAFHNQYAHYPAEYYG 453


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 566  GHTPSTSRPEPATKSAFR 619
            GH PSTS  +  TK ++R
Sbjct: 1158 GHKPSTSSWQKPTKPSYR 1175


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 303 AIKAPTLSGGYRTCPAPLGS 244
           A++ P L+GG R  P P  S
Sbjct: 318 AVQVPQLAGGGRRGPGPARS 337


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 500 SQGSTVPSHIFHHLQSLI 447
           SQ  T  SH+ HH  SL+
Sbjct: 125 SQPPTDNSHVHHHQTSLL 142


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 619 TGPAKPNPVPPD*RLG 666
           TGP +P    PD R+G
Sbjct: 136 TGPVRPAACTPDSRVG 151


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 515 ITEPLVPQLRMASGTGLGHTPSTSRPEPATKSA 613
           + +P VP++  A       + +   P+PA++S+
Sbjct: 206 VPKPTVPKIPPAEFPTTSSSSALESPDPASRSS 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,059
Number of Sequences: 336
Number of extensions: 4188
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)