Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00166
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    28   1.1  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   2.5  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   4.4  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   4.4  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    26   5.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   7.7  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.7  

>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 394 SRYFGLTGLLSPTLSMSDLFEPSLKSIRFKGNKSSDAVWGVPDVPGSPRLY 242
           S Y  +TG  S TL+   +FE  + S  F G  S D      +  G+ RL+
Sbjct: 304 SPYITVTGEWSGTLADCTIFEEGVDSSTFIGPNSGDISTWTDEYKGAVRLF 354


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +1

Query: 82  ETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEA--EVSDSSSNSCEMDTRSRAEG 255
           E+  +  D + + +++E E+S    +    +    +E+  E SDSSS+S + ++ S +EG
Sbjct: 156 ESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEG 215

Query: 256 S 258
           S
Sbjct: 216 S 216



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 187 AEAEVSDSSSNSCEMDTRSRAEGS 258
           + +E SDSSS+S + ++ S +EGS
Sbjct: 139 SSSEDSDSSSSSSDSESESSSEGS 162



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 82  ETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEV--SDSSSNSCEMDTRSRAEG 255
           E+  +D+D + + + +E E+S    +    +    +E+    SDSSSNS + +  S ++ 
Sbjct: 228 ESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDS 287

Query: 256 S 258
           S
Sbjct: 288 S 288


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 163 IPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPV 273
           I  A  ++   EVS SSS+S  +D RS +E  +   V
Sbjct: 32  ISSASHKSEHVEVSQSSSDSKNVDGRSTSEKRKVESV 68


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 447 NKALKMMENMGWN-GGALGARGMG 515
           N ++KM+ +MGWN G  LG    G
Sbjct: 492 NVSMKMLNSMGWNKGSGLGTNENG 515


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 530 PMALLSHSPRSQGSTVPSHIF 468
           P + L+HSPR    TV +H+F
Sbjct: 172 PFSCLNHSPRQIHKTVRNHLF 192


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 291 ELLLPLKR--IDFKLGSNRSDIDSVGDSKPVKPKYRLGRWQIKLLNDMSVP 437
           ++ + LKR  I+F L SN++   ++G    +   + LG W+  LLN +  P
Sbjct: 261 DIFIGLKRDTIEFNLASNKNT--TIGTISWLLNLFVLGSWKSPLLNALHYP 309


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 396 GRWQIKLLNDMSVPVKCNKALKMMENMGWNGGALGARGMG*QSHWYLSSEWHQAPA 563
           G W++ L   +  P+ CN  L  +E++   G           S + + ++W + PA
Sbjct: 379 GSWRVNLDTQLIDPLPCNLGLIFLESLSEIGQIYTGYCNRQDSVFKIITKWREKPA 434


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/72 (20%), Positives = 27/72 (37%)
 Frame = +1

Query: 49  DDLCVTFQRVLETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCE 228
           DD  +T       C+ D D+NL +  N  E +         A   +    V D ++    
Sbjct: 249 DDYLITASSDGSVCIWDKDWNLVIEHNIPEGNRITCMVAMLADSNSEPKNVEDEAAKRQS 308

Query: 229 MDTRSRAEGSRA 264
           +D+ +    S +
Sbjct: 309 LDSETSETSSES 320


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 109 CSRDPGHKSPIPAETSHRGRRSDPYYT 29
           CS  P   + +  E   R RR DPY+T
Sbjct: 704 CSSTPRTNTILANERLPRSRRDDPYWT 730


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 421 FSNFICHLPSRYFG-LTGLLSPTLSMSDLFEPSLKSIRFKG 302
           F  FI H+P +  G +TG+L P++++S L       I+F G
Sbjct: 411 FLKFIDHMPPKLLGIITGIL-PSVALSILMSLVPPFIKFLG 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,489
Number of Sequences: 5004
Number of extensions: 67290
Number of successful extensions: 232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)