Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00166
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030... 32 0.37
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 31 1.1
03_05_0931 - 28912700-28913056,28913245-28913319,28913424-289134... 30 1.5
10_08_1038 - 22485394-22485960,22486712-22487197 30 2.0
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 30 2.0
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 30 2.0
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 3.4
06_03_0050 + 15980215-15981519 29 3.4
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500... 29 3.4
01_05_0028 - 17337455-17337664,17338407-17338697,17339926-173402... 29 3.4
09_02_0357 + 7788946-7789326,7789620-7789997 29 4.5
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 29 4.5
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 4.5
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 28 6.0
04_03_0910 + 20751014-20753437 28 6.0
12_02_0058 + 13015401-13016654 28 7.9
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 28 7.9
04_03_0920 + 20826876-20829293 28 7.9
02_05_0692 + 30973171-30973908 28 7.9
01_01_0967 - 7604362-7604589,7604866-7605012,7605351-7605545 28 7.9
>01_06_1743 +
39601644-39602023,39602301-39602734,39602828-39603006,
39603636-39603716,39603828-39603914,39604000-39604006,
39604241-39604312,39604712-39604792,39605156-39605262
Length = 475
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 491 SPGSEGNGITEPLVPQLRMASGTGLGHTPSTSRPEPATKSAFR 619
SPG +G G VP+ A+ G +PS R +P ++SA R
Sbjct: 85 SPGRKGVGSPSRQVPRFAAAAAAGTEPSPSLDRRDPMSRSARR 127
>11_04_0442 -
17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +2
Query: 92 SRITTTTSLLPPMKTKQVALF*RRYPGLENEMLKLRSQIRHLTV 223
S++ TT+++ P+K+++V ++ + EML S+IR L+V
Sbjct: 192 SKVLPTTTIILPLKSEKVDAVKKQLSSMHPEMLLFLSKIRQLSV 235
>03_05_0931 -
28912700-28913056,28913245-28913319,28913424-28913497,
28913604-28913691,28913785-28913936,28914050-28914209,
28914303-28914458,28914566-28914784,28915390-28915650,
28917183-28917389,28917488-28917619
Length = 626
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 491 SPGSEGNGITEPLVPQLRMASGTGLGH 571
S GS G G +P P+ A+G+G GH
Sbjct: 560 SSGSSGGGAADPFRPRSSAAAGSGAGH 586
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 145 NLFRLHWWQQ*GCSRDPGHK-SPIPAETSHRGRRSDPYYTTTVTCI 11
N+ R+H G +R P H +P PA T H + +T TV C+
Sbjct: 109 NILRIH--APIGLARSPAHLLAPTPANTPHLTAAAPHAFTMTVPCV 152
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 273 TPQTASELLLPLKRIDFKLGSNRSDIDSV 359
TP A+E+++P K I F G+N SD+ +
Sbjct: 539 TPSNATEVIIPRKYIGFICGANGSDLAEI 567
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 447 NKALKMMENMGW-NGGALGARGMG 515
N A KMMENMGW G ALG G
Sbjct: 417 NSAKKMMENMGWKEGEALGKSTKG 440
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 278 GGTGRARLPSALLLVSISQLLDDESETSASAFRFPALGI-FSKTAQLVSSSLVATVRL 108
G +GR LP L++ L D+ + L + +SKT QL+SSS+ TVRL
Sbjct: 1210 GKSGRDTLPEHLVVPDKVFALADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRL 1267
>06_03_0050 + 15980215-15981519
Length = 434
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 430 DMSFSNFICHLPSRYFGLTGLLSPTLSMSDLFEPSLKSIRFKGNKSSDAVWGVPDV 263
D+S +NF +P F L S LS ++ F SL F +++ W V DV
Sbjct: 263 DLSMNNFSGSIPRELFALPSASSLLLSRNN-FTGSLAVPAFASERAATPPWSVVDV 317
>02_04_0653 -
24747959-24748276,24748847-24748959,24749815-24750015,
24750097-24750267,24750354-24750425,24751515-24751543,
24752161-24752303
Length = 348
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 196 EVSDSSSNSCEMDTRSRAEGSRARP 270
E +S SN+CE+D +R E S +RP
Sbjct: 72 EFLNSKSNNCEIDGENRPEESNSRP 96
>01_05_0028 -
17337455-17337664,17338407-17338697,17339926-17340218,
17340812-17340959,17341177-17341219,17341985-17342307
Length = 435
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 524 ALLSHSPRSQGSTVPSHIFHHLQSLI 447
ALLSHSP G P H HH S++
Sbjct: 6 ALLSHSPPGLGGFPPRHHHHHRLSVL 31
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 502 RGEWDNRAIGT-SAQNGIRHRLRAHAVYISTRTRDQVRLQTGPAKPNPVPP 651
R +A+G+ SA++ RAH +R+ R T P +P+PVPP
Sbjct: 121 RSRRKRQALGSGSARSTAPTPPRAHTTPPCSRSVAAPRASTSPLRPSPVPP 171
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 506 PRSQGSTVPSHIFHHLQSLIALYRDGHVV**FYLPPAQP 390
PR + PS+ FH+L L DG V F LPP P
Sbjct: 71 PRVETPPPPSYGFHNLDRRTMLLADGSVRTYFALPPDYP 109
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 567 PKPVPDAILS*GTNGSVIPFPSLPGLHRSIPYFPSSSKPYCTLP 436
P PVP T GS +P PS P +P P ++ PY + P
Sbjct: 453 PPPVPPPP---PTTGSFMPIPSAPFAGLPVPAGPMTAVPYNSYP 493
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 154 LEKIPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPPR 282
L + A +R AE+E+S SS S +S + S A P P R
Sbjct: 45 LRSVGTALRRYAESEISPESSLSISEADKSPSHSSMASPSPSR 87
>04_03_0910 + 20751014-20753437
Length = 807
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 472 IWDGTVEPWERGEWDNR 522
+W+ +VE W GEW+ R
Sbjct: 207 VWNSSVEYWSSGEWNGR 223
>12_02_0058 + 13015401-13016654
Length = 417
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +2
Query: 521 EPLVPQLRMASGTGLGHTPSTSRPEPAT 604
+P P AS TG HTP S P PAT
Sbjct: 278 DPFEPPPAAASVTGGHHTPQPSVPVPAT 305
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 502 RGEWDNRAIGTSAQNGIRHRLRAHAVYISTRTRDQV 609
R + D R I T +NG+R R R+ V + ++RDQ+
Sbjct: 2 RKKVDER-IRTLIENGVRERQRSMFVIVGDKSRDQI 36
>04_03_0920 + 20826876-20829293
Length = 805
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 472 IWDGTVEPWERGEWDNRAIGTSAQ 543
+W+ TV W G+W+ R G + +
Sbjct: 207 LWNSTVAYWSSGDWNGRYFGLAPE 230
>02_05_0692 + 30973171-30973908
Length = 245
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 474 MGWNGGALGARGMG*QSHWYLSSEWHQAPA*GTRR 578
MG GGA G+RG G + S W Q P ++R
Sbjct: 24 MGNGGGASGSRGCGLRHQRQRPSVWRQRPRSSSQR 58
>01_01_0967 - 7604362-7604589,7604866-7605012,7605351-7605545
Length = 189
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 46 TDDLCVTFQRVLETCVQDHDYNLTVATNEDETSCAVLEKIP 168
T++LC R++ V DHD + N D CAV P
Sbjct: 53 TEELCDNGARLVYGDVNDHDILVAAIKNADVVICAVGHTTP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,761,484
Number of Sequences: 37544
Number of extensions: 538688
Number of successful extensions: 1990
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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