Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00166
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_38778| Best HMM Match : HRM (HMM E-Value=4.6) 31 1.1
SB_34319| Best HMM Match : C2 (HMM E-Value=0.003) 30 1.5
SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 29 4.6
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 29 4.6
SB_25120| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45) 29 4.6
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_49406| Best HMM Match : Prion_octapep (HMM E-Value=8.2) 28 6.1
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 28 6.1
SB_54321| Best HMM Match : Keratin_B2 (HMM E-Value=2.7) 28 6.1
SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_50210| Best HMM Match : I-set (HMM E-Value=0.11) 28 8.1
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 28 8.1
>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 461 DDGKYGMERWSPGSEGN-GITEPLVPQLRMASGTGLGHTPSTSRPEPATKS 610
DD K + G EG +TEP Q + A G LG PSTS AT+S
Sbjct: 521 DDNKLSLGTEGKGLEGRPALTEPAFEQSKSAQG--LGVIPSTSSESTATES 569
>SB_38778| Best HMM Match : HRM (HMM E-Value=4.6)
Length = 331
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 476 GMERWSPGSEGNGITEPLVPQLRMASGTGLGHTPSTSR 589
G++ WSP S G LV ++ S T L H P+TSR
Sbjct: 259 GVQDWSPTSSG---CPRLVSDIKWVSKTSLRHQPATSR 293
>SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)
Length = 557
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 487 VEPWERGEWDNRAIGTSAQNGIRHRLRAHAVYISTRTRDQVRLQTG 624
VE E G W+N SA G+ R+R ++S D R G
Sbjct: 97 VEATEDGLWENGDEDPSAHGGVELRIRTSRAWVSESIADDFRSHAG 142
>SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.5 bits (63), Expect = 2.7
Identities = 29/110 (26%), Positives = 42/110 (38%)
Frame = +1
Query: 79 LETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGS 258
LE C++ H Y T+A E S E P +R V SC R R +
Sbjct: 327 LEFCLR-HPY--TIALVERIMSEEYFES-PLGRRRPPGRRVVGLLDASCRNGNRRRELAA 382
Query: 259 RARPVPPRQRRSFYCL*NESISNSARTGRTLTVSVTVNQSSRNIGWAGGK 408
P +R+ ES N ++ +T+T + + IGW G K
Sbjct: 383 AFTRTPAVNQRATDPHATESTDNQSKITKTITDAAVITGLVAGIGWVGRK 432
>SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1510
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 64 TFQRVLETCVQDHDYNLTVATNED 135
TFQR++E C++D +YN V +D
Sbjct: 682 TFQRLMEHCLRDPNYNTCVVYMDD 705
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 479 MERWSPGSEGNGITEPLVP-QLRMASGTGLGHTPSTSRP 592
M RW G+GIT+ P QL +G LG + T+ P
Sbjct: 70 MRRWGVFRSGSGITDAQAPFQLFQCAGPDLGDSLLTANP 108
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 64 TFQRVLETCVQDHDYNLTVATNED 135
TFQR++E C++D +YN V +D
Sbjct: 5 TFQRLMEHCLRDLNYNTCVVYMDD 28
>SB_25120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -2
Query: 296 KLRRCLGGTGRARLPSALLLVSISQLLDDESETSASAFRFPALGIFSKTA----QLVSSS 129
+LRRC G + + L LV+ L SE + RFP +FS A LV SS
Sbjct: 34 RLRRCRGVSAICAITLCLFLVNAVIFLGSLSELGSHESRFPR-AVFSSAATRNQALVDSS 92
Query: 128 LV 123
+V
Sbjct: 93 IV 94
>SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 64 TFQRVLETCVQDHDYNLTVATNED 135
TFQR++E C++D +YN V +D
Sbjct: 784 TFQRLMEHCLRDLNYNTCVVYMDD 807
>SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45)
Length = 732
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 64 TFQRVLETCVQDHDYNLTVATNED 135
TFQR++E C++D +YN V +D
Sbjct: 650 TFQRLMEHCLRDLNYNTCVVYMDD 673
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 467 GKYGMERWSPGSEGNGITEPLVPQLRMASGTGLGHTPSTSRP 592
G + W G+E P+ P S G G TP+T+ P
Sbjct: 659 GNLFSDAWKKGTEYEENEAPISPDTPSTSSAGPGMTPNTTEP 700
>SB_49406| Best HMM Match : Prion_octapep (HMM E-Value=8.2)
Length = 207
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 38 WIGPTTSV*RFSGYWRLVSRITTTTSLLPPM 130
WI PT SV F G W + RI +S + P+
Sbjct: 72 WIRPTFSVQPFQGGWTQLKRIVYDSSPITPV 102
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -3
Query: 514 PIPLAPRAPPFHPIFSIIFKALLHFTGTDMSFSNFIC 404
P P APR P FHPI A + S F C
Sbjct: 405 PFPYAPRYPAFHPIAHQYISAPSTQASSTRSTQGFTC 441
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 431 RPGKVQ*GFEDDGKYGMERWSPGSEGNGITEPLVPQLRMASGT 559
+PGK ++G + RWS E G+ +PL P++ + S T
Sbjct: 242 KPGKPPPNRVENGSFPGNRWSSEVEYRGLCKPLNPEIIVWSFT 284
>SB_54321| Best HMM Match : Keratin_B2 (HMM E-Value=2.7)
Length = 519
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 187 AEAEVSDSSSNSCEMDTRSRAEGSRARPVPPRQRRSFYCL*NESISNSART 339
A++ +S S+ C M+TR + + PRQ R + C + IS+SA+T
Sbjct: 256 AQSYRDNSGSDPCMMNTRPLDDHGTGE-MSPRQERRYVC---QEISDSAKT 302
>SB_41312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 160 KIPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPPRQRR 291
++ +R E E S S + S +EG A P PPR R+
Sbjct: 88 RVGGGAQRVGEEEACSSMDTSQYEEEESASEGQEANPHPPRGRK 131
>SB_50210| Best HMM Match : I-set (HMM E-Value=0.11)
Length = 348
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -1
Query: 483 SIPYFPSSSKPYCTLPGRTCRLVILFATCPADISA*LVYCHRHCQCPTCSSRV 325
SI P+ S YC +++ ++A C + I++ ++C+C S+V
Sbjct: 118 SIASVPAMSVKYCKCARNVSQVLQVYAQCQSSIASVRTMSVKYCECARNVSQV 170
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 49 DDLCVTFQRVLETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSS 213
DD+ T + LE CV DY + E + +P+ GKR S+++
Sbjct: 1937 DDVTYTSKVRLENCVNHKDYEREIFLRESRQQ--QFDTLPKVGKRTESYRSSENN 1989
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.9 bits (59), Expect = 8.1
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = +1
Query: 19 LLSSCNMDRTDDLCVTFQRVLETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAE 198
L+ S ++ L T+ +E + D L ++ED+ + E I G N + +
Sbjct: 136 LIHSAALETLLQLENTYALAVEGLLSHRDAALK--SSEDKHRKKLEEAISNIGLTNTDRD 193
Query: 199 VSDSSSNSCE----MDTRSRAEGSRARPVPPRQRRSFYCL*NESISNSARTGRTLTV 357
VS+ ++ CE ++T +E S+ + + R+ R + +E I+ R L V
Sbjct: 194 VSNLATKQCEDTQMLETYWSSELSQLQEMQKREYREWVVKVHEDIARGEADWRILEV 250
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,923,471
Number of Sequences: 59808
Number of extensions: 558928
Number of successful extensions: 1770
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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