Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00166
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    30   1.8  
AC006726-2|AAF60452.1|   86|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z83127-2|CAB05632.2|  252|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z49908-1|CAA90093.1|  816|Caenorhabditis elegans Hypothetical pr...    28   5.4  
DQ342049-1|ABC69941.1|  830|Caenorhabditis elegans STIP protein.       28   5.4  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    28   5.4  
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p...    27   9.4  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U10402-4|AAK95873.1|  255|Caenorhabditis elegans Hypothetical
           protein C34E10.11 protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +1

Query: 121 ATNEDETSCAVLEKIP------RAGKRNAEAEVSDSSSNSCEMDTRSRAE 252
           A +  ET   +LE+I        AGK+ AE EV ++ S S E  TRS  E
Sbjct: 139 AEDAKETKSVILEEIRVELEKRNAGKKQAEDEVKNAISRSSEFITRSNLE 188


>AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical
           protein F48A11.5a protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = +1

Query: 163 IPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPP 279
           IPR  KR    E + SSS S      SR  G+RA PVPP
Sbjct: 144 IPRQ-KRGQATEPTPSSSGSSSASFSSR-RGTRANPVPP 180


>AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical
           protein F48A11.5b protein.
          Length = 627

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = +1

Query: 163 IPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPP 279
           IPR  KR    E + SSS S      SR  G+RA PVPP
Sbjct: 139 IPRQ-KRGQATEPTPSSSGSSSASFSSR-RGTRANPVPP 175


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/91 (26%), Positives = 39/91 (42%)
 Frame = +1

Query: 4   NYICKLLSSCNMDRTDDLCVTFQRVLETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKR 183
           NY    LS  +++   +  +TF   L   ++  D   T  TN  + S +  + I +  KR
Sbjct: 263 NYTPFGLSESDLEENSEDLITFATDLRRYLETEDPQSTSTTNRRKDSISTEDVILKYVKR 322

Query: 184 NAEAEVSDSSSNSCEMDTRSRAEGSRARPVP 276
               + S+SSS   E+ T    E  R +  P
Sbjct: 323 KKPTDHSESSSPR-ELSTSPVEEPRRRKKEP 352


>AC006726-2|AAF60452.1|   86|Caenorhabditis elegans Hypothetical
           protein Y23B4A.2 protein.
          Length = 86

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = +1

Query: 67  FQRVLETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSR 246
           F   + T +  +D++L         S A+L   PR GKR+     +  S NS +      
Sbjct: 12  FSLPVSTALDYNDFSLQRIARAPHPSSALLVPYPRVGKRSNILNNNSESQNSVQKRLYMA 71

Query: 247 AEGSRARPVPPR 282
             G RA    PR
Sbjct: 72  RVGKRAFFYTPR 83


>Z83127-2|CAB05632.2|  252|Caenorhabditis elegans Hypothetical
           protein T23F6.2 protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 403 HLPSRYFGLTGLLSPTLSMSDLFEPSLKSIRFKGNKSSDAVWGVPDV--PGSPRLYS 239
           +L  R  GL  L  PT    +   P L  +   GNK ++    VPDV  PG P ++S
Sbjct: 21  YLRDRPRGLGLLQLPTGMSDERSGPILPGLYIAGNKVNEKPQTVPDVHLPGQPAVFS 77


>U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical
           protein F14D12.1a protein.
          Length = 680

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 127 NEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPPR 282
           NE++   A L  I    + N+++E   SSS S   D RS+    +    PPR
Sbjct: 529 NENQKKAAAL--ITNHNRENSQSESMASSSESLSSDARSKISIKKRSNSPPR 578


>U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical
           protein F14D12.1b protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 127 NEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPPR 282
           NE++   A L  I    + N+++E   SSS S   D RS+    +    PPR
Sbjct: 529 NENQKKAAAL--ITNHNRENSQSESMASSSESLSSDARSKISIKKRSNSPPR 578


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 447 NKALKMMENMGWNGGALGARGMG 515
           NK  ++M  MGW G  LGA   G
Sbjct: 606 NKGAQLMAKMGWGGKGLGANESG 628


>Z49908-1|CAA90093.1|  816|Caenorhabditis elegans Hypothetical
           protein C07E3.1a protein.
          Length = 816

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 447 NKALKMMENMGWN-GGALGARGMG 515
           NK +KMM+ MG+  G  LGA+G G
Sbjct: 141 NKIMKMMQAMGYKPGEGLGAQGQG 164


>DQ342049-1|ABC69941.1|  830|Caenorhabditis elegans STIP protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 447 NKALKMMENMGWN-GGALGARGMG 515
           NK +KMM+ MG+  G  LGA+G G
Sbjct: 155 NKIMKMMQAMGYKPGEGLGAQGQG 178


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 447 NKALKMMENMGWNGGALGARGMG 515
           NK  ++M  MGW G  LGA   G
Sbjct: 606 NKGAQLMAKMGWGGKGLGANESG 628


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 552 DAILS*GTNGSVIPFPSLPGLHRSIPYFPSSSKPY 448
           DAI S   +GS +P+P  PG   ++P+ P+S+  Y
Sbjct: 264 DAIYSTPYSGSPLPYPPPPG--TTVPHTPNSTYRY 296


>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
           protein T05F1.6 protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 124 TNEDETSCAVLEKIPRAGKRNAEAEVSDS-SSNSCEMDTRSRAEGSRARP 270
           T   +T+ A   + PR  + NA+AE  +S  +   E  T SR   +RA+P
Sbjct: 455 TKTHDTNQAKSTRTPRGRRSNADAETMESVEAEKVETPTSSR-RSTRAKP 503


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 495 GLHRSIPYFP--SSSKPYCTLPGRTCRLVILFATCPADISA*LVYCHR 358
           GL  ++P+ P  S S      PG T R+ +  ++ PA   A L YC +
Sbjct: 357 GLVAALPFLPADSCSTTIVCPPGTTPRVNLFGSSIPAPTPATLAYCRQ 404


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 491  SPGSEGNGITEPLVPQLRMASGTGLGHTPSTSRPEPAT 604
            SPG   NG + P VP+    S TG G +P  + P+P T
Sbjct: 1444 SPGPSPNGPSNPSVPE----SSTGGGPSPGPA-PDPGT 1476


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 178 KRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVPPRQRR 291
           KR++       S +S E D+RSR+     +  PP+++R
Sbjct: 44  KRDSSRSSRSRSRSSSESDSRSRSSSPVVKNSPPKRKR 81


>AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical
           protein C39B5.2 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 153 NSATCFVFIGGNSEVVVVILDTSLQYPLKRHTEVVGPIHITRRQ*LAYVI 4
           N+ TC + I  N E+V     ++LQ   +    V+  IH+T +  +A  +
Sbjct: 133 NAVTCCICITSNEEIVFYFNGSALQDVHQEVYNVIDNIHMTAKNEVAITL 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,015
Number of Sequences: 27780
Number of extensions: 415496
Number of successful extensions: 1468
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)