Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00166
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.38 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             26   0.38 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 193 AEVSDSS-SNSCEMDTRSRAEGSRARPVPPRQRRSFYC 303
           A+VSDS  SN+C      R+ GS       R   S YC
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYC 47


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 193 AEVSDSS-SNSCEMDTRSRAEGSRARPVPPRQRRSFYC 303
           A+VSDS  SN+C      R+ GS       R   S YC
Sbjct: 10  AKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYC 47


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = -3

Query: 130 HWWQQ*-GCSRDPGHKSPIPAETSHRGRRSDPYYTT 26
           HW      CS  P    P   E+  R RR  P Y +
Sbjct: 384 HWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNS 419


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 513 PFPSLPGLHRSIPYFPSSSKP 451
           P P++PG   ++P  PS + P
Sbjct: 431 PLPNMPGSMPTMPTMPSMAGP 451


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 651 RRYRIRFSWSCLKADLV 601
           RR+  + ++SCLK DL+
Sbjct: 279 RRFEEQGNYSCLKVDLI 295


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 524 PLVPQLRMASGTGLGHTPSTSRPEPA 601
           P   +++ + G G G TP   RP  A
Sbjct: 1   PRTRRVKRSDGRGNGGTPEEKRPRTA 26


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 32   VIWIGPTTSV*RFSGYW 82
            +I +GP T +  F G+W
Sbjct: 968  MILVGPGTGIAPFRGFW 984


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,545
Number of Sequences: 438
Number of extensions: 5121
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)