Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00166
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /... 30 1.2
At3g05680.1 68416.m00634 expressed protein 29 2.9
At5g40690.1 68418.m04939 expressed protein 29 3.8
At3g58050.1 68416.m06471 expressed protein 29 3.8
At2g40750.1 68415.m05026 WRKY family transcription factor contai... 29 3.8
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 29 3.8
At5g25910.1 68418.m03077 disease resistance family protein conta... 28 5.0
At5g42050.1 68418.m05119 expressed protein similar to gda-1 [Pis... 28 6.6
At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative... 28 6.6
At5g35080.1 68418.m04151 expressed protein 27 8.8
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 27 8.8
At2g31850.1 68415.m03889 expressed protein 27 8.8
At2g20890.1 68415.m02462 expressed protein 27 8.8
>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
protein kinase, putative nearly identical to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783
Length = 1168
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 97 DHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVP 276
D D T + T+ +L+KIP R+++ E D + + E+ T EG + P
Sbjct: 11 DRDPQPTTISTPTSTNAKLLKKIPAIPFRHSDKEGEDEQAKTDEVTTELAGEGPMSHDSP 70
>At3g05680.1 68416.m00634 expressed protein
Length = 2057
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -1
Query: 543 LS*GTNGSVIPFPSLPGLHRSIPYFPSSSKPYCTLPGRT 427
+S GT S P +P L +IP + SS PY +LP RT
Sbjct: 1791 ISHGTQSSGGPTRLMPPLPSAIPQY--SSNPYASLPPRT 1827
>At5g40690.1 68418.m04939 expressed protein
Length = 210
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 97 DHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDT 237
DHDY+ E+E +V+E++ + E + SN + DT
Sbjct: 129 DHDYDYDEENEEEENRGSVVEEVVNIQSSDDGGETEEEGSNDDDDDT 175
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 494 PGSEGNGITEP-LVPQLRMASGTGLGHTPSTSRPEPATKSAF 616
P +GN T+P +LR+ S G+G PST+R +K +
Sbjct: 803 PVFQGNRYTQPDYTRELRLKSKVGVGPNPSTTRDSLHSKQVW 844
>At2g40750.1 68415.m05026 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 346
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/66 (28%), Positives = 25/66 (37%)
Frame = +3
Query: 252 GEPGTSGTPQTASELLLPLKRIDFKLGSNRSDIDSVGDSKPVKPKYRLGRWQIKLLNDMS 431
G SG P EL+ + K S D V S P+ + G W +D +
Sbjct: 51 GSGSVSGGPDPVDELMSKILGSFHKTISVLDSFDPVAVSVPIAVE---GSWNASCGDDSA 107
Query: 432 VPVKCN 449
PV CN
Sbjct: 108 TPVSCN 113
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 67 FQRVLETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSR 246
F+R+ + + DY + E AV +P R+A AE S + SN D+R R
Sbjct: 184 FERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGYDSRKR 243
>At5g25910.1 68418.m03077 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-5D [Lycopersicon
esculentum] gi|3894393|gb|AAC78596;
Length = 811
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 475 IFSIIFKALLHFTGTDMSFSNFICHLPSRYFGLTGLLSPTLSMSDLFEPSLKSIRFK 305
I +++F+ + D+S +N +P FGL L L +DL KSI K
Sbjct: 226 ISAVVFENMTDLKHVDLSVNNLTGRIPDVLFGLKNLTELYLFANDLTGEIPKSISAK 282
>At5g42050.1 68418.m05119 expressed protein similar to gda-1 [Pisum
sativum] GI:2765418
Length = 349
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/73 (19%), Positives = 34/73 (46%)
Frame = +1
Query: 67 FQRVLETCVQDHDYNLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSR 246
F + + T ++ + YN+ + N +I + GK+N + + +++N D ++
Sbjct: 138 FNKGVYTSMKKYGYNVNLKNNNKNKGIDEDHQIQKGGKKNRKNQ--QNNNNQRNEDDKNN 195
Query: 247 AEGSRARPVPPRQ 285
R + +PP +
Sbjct: 196 GLDKRFKTLPPAE 208
>At3g12560.1 68416.m01563 telomeric DNA-binding protein, putative
similar to telomeric DNA-binding protein 1 [Arabidopsis
thaliana] gi|13641340|gb|AAK31590
Length = 619
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 109 NLTVATNEDETSCAVLEKIPRAGKRNAEAEVSDSSSNSCEMDTRSRAEGSR 261
N + ++D T ++ + AGK E+E S +SSN+ E + + E +
Sbjct: 32 NKRIDHDDDNTQICAIDLLALAGKILQESESSSASSNAFEEIKQEKVENCK 82
>At5g35080.1 68418.m04151 expressed protein
Length = 282
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = -3
Query: 517 YPIPLAPRAPPFHPIFSIIFKALLHFTGTDMSFSNFICHLPSRYFGLTGLLSPTLSMSDL 338
Y I P PFHP ++ +L D + F+C+LP +G S ++S +
Sbjct: 44 YKIEFLPEDSPFHPGDNLESMVML-----DKHGNRFLCYLPKEEKATSGWTSSQQNISTV 98
Query: 337 FEPSLKSIRFK 305
+ + ++ K
Sbjct: 99 MMETQQLVKLK 109
>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
(PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
(EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
{Arabidopsis thaliana}; contains Pfam profiles: PF00614
phospholipase D.active site motif, PF00168 C2 domain
Length = 1083
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 513 PFPSLPGLHRSIPYFPSSSKPYCTLP 436
P+P P S PY+P PY T P
Sbjct: 32 PYPPPPTNQYSAPYYPYPPPPYATPP 57
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 175 GKRNAEAEVSDSSSNSCEMDTRSRAEGSRARPVP-PRQRRSFYCL*NESISNSA 333
G R +A +S SS+ SC S S PVP P S C + + S SA
Sbjct: 59 GLRQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGSA 112
>At2g20890.1 68415.m02462 expressed protein
Length = 300
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -2
Query: 200 TSASAFRFPALGIFSKTAQLVSS-SLVATVRL*S*SWTQVSNTR*NVTQRSSVRSILHDD 24
T+ S+ FPALG K + SS L + +R+ T+ S R ++ RS+ +S++H
Sbjct: 4 TAISSLSFPALGQSDKISNFASSRPLASAIRI----CTKFS--RLSLNSRSTSKSLIHCM 57
Query: 23 SNL 15
SN+
Sbjct: 58 SNV 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,510,451
Number of Sequences: 28952
Number of extensions: 389724
Number of successful extensions: 1379
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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