Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00165
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   3.5  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   6.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   6.2  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   6.2  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    25   6.2  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    25   8.1  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 92  SLSEQ--NLIDCSEQYGNNGCNGGLMDNAFKYIKDNGGIDTEQTYPYEG 232
           SL EQ  NL+    QY     NG +      Y   N   +T + YPY G
Sbjct: 28  SLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTG 76


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 487 QRPARRCRNPQPEPRGPVQWRSTRPR 410
           QR   R R+P+P  R  VQ ++  PR
Sbjct: 832 QRSTSRARSPEPTNRNSVQSKNVDPR 857


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 289 VDIPEGDEQKLMEAVATVGPVSVAID 366
           +D+P G  + L+ A  T  P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 62   QHFRQSGYLVSLSEQNLIDCSEQYGN 139
            QHF + G +     QN+  C EQ  N
Sbjct: 947  QHFGKQGTIFDFHSQNMRQCREQLHN 972


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 244 VQVHPKNTGAEDVG----FVDIPEGDEQKLMEAVATVGPVSVAIDASHTSFQLY 393
           +Q++ +NTG E +     F+D P  D +    A+  +G +    D +  + Q+Y
Sbjct: 630 IQLNLENTGIELLSILFSFLDDPSPDNEAFYRALMALGTLCTVPDIALAASQIY 683


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 188 DNGGIDTEQTYPYEGVDDKCRYIPRTPVLRT 280
           D+  +   ++ P+E     C+++P TP L T
Sbjct: 313 DSASLKFRKSLPHEQAVIDCKFLPNTPYLLT 343


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 152 GGLMDNAFKYIKDNGGIDTEQTY 220
           G L ++  K+I+DNGGI T + +
Sbjct: 273 GELTNSMVKFIQDNGGIVTVEDF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,297
Number of Sequences: 5004
Number of extensions: 35184
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)