Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00165
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 356 TETGPTVATASISFCSSPSGMSTKPTSSAPV 264
           ++  P   +A +S   SP+G    P++ AP+
Sbjct: 387 SQVSPVSMSALVSAVRSPAGGQLPPSAGAPM 417


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 159 SPPLQPLFPYCSEQSMRFCS 100
           SPPL   FP  + + ++ CS
Sbjct: 172 SPPLLGCFPRATNRDIKKCS 191


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 471 VAVTHNQNPVVQFSGGALVLVV 406
           V + HN  PVV+ SG  L  V+
Sbjct: 677 VFLKHNDTPVVRASGRELSYVL 698


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +2

Query: 116  DCSEQ-YGNNGCNGGLMDNAFKYIKDNG 196
            D SE  Y  +G NG  +DN  +   + G
Sbjct: 1268 DVSEGIYDGSGANGSFLDNLIRSSLETG 1295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,816
Number of Sequences: 438
Number of extensions: 2388
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)