Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00164
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.2  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   4.2  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    26   4.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   9.7  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.7  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 1    LEFYRD*RTAIHFYIPSLAINTETKEKKFYCK*HLLLLQCVSLIH 135
            LEFYR+    +  YI    +NT       YCK + +L    S +H
Sbjct: 947  LEFYRETDCTLGQYIEDSCLNTNVSCGGEYCKTNDMLWHYRSYVH 991


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 165 LIRSGLHW-LQYSPLIVEASYQ*KHALFPWEIFHCQSYGLF*GLQ 296
           LI  GL + ++Y   +   S +     F W  +HC S     GLQ
Sbjct: 409 LIEVGLSYEVRYGTRVTGQSIRDASCYFVWSFYHCYSKSAIEGLQ 453


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 96  FAIEFFFLCLSIYGKTRYIKMNCCSLV 16
           F IE + L   +Y K++YIK+  CS++
Sbjct: 60  FMIEEWHLLAILYDKSKYIKIIICSVL 86


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -3

Query: 347  DL*SVLESTAYSKRHDNLESLKQSVRLAVKNFPWKKCVLLLITGLND*RTVLQPMETTSN 168
            D+ S+L+ TAY      +E++   +   +K+FP +    L++  LND    +  +   S 
Sbjct: 3120 DVTSILK-TAYPLLALTMETMVDQIHTRLKSFPEEDAYRLIVALLNDGLQYISRLGVVSK 3178

Query: 167  KLFIL 153
              F L
Sbjct: 3179 NTFQL 3183


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 539  YHS*EGSEAPYNTMFNNQEWFFQQDSAPGHKARSTQSWLETNVSD 405
            Y + E  ++   TMFNN   + ++ S     A   Q+ +ET + +
Sbjct: 1126 YKTLEAMKSDLMTMFNNARTYNEEGSFVYEDANKMQTAMETKIEE 1170


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 332 LESTAYSKRHDNLESLKQSVRLAVKNFPWKKCVLL 228
           L S+   K H + E   + +     +FPWK C +L
Sbjct: 259 LSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTIL 293


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 487 KNGSSSKTRRQVIKLGLRSLGWKRTFRTSSEL 392
           K+ S+ K +RQ  +L  +S  W R ++   E+
Sbjct: 206 KSDSNRKRKRQAYELDSQSCPWHRQYKVEREV 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,352
Number of Sequences: 5004
Number of extensions: 61615
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)