Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00164
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...    29   3.3  
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    28   5.7  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    28   7.6  

>04_04_1630 -
           34896021-34896143,34896329-34896403,34896500-34896556,
           34897176-34897352,34897426-34897492,34898043-34898101,
           34898188-34898241,34898455-34898604,34898709-34898918,
           34898980-34899039,34899399-34899527,34899616-34899720,
           34899935-34900024,34900630-34900695,34901047-34901115,
           34901348-34901467,34901572-34901634,34901681-34901817,
           34902070-34902160,34902298-34902463,34902700-34904172,
           34905666-34905940,34906322-34906819,34906996-34907145,
           34907840-34907911,34908006-34908266,34908478-34908558,
           34908745-34908996,34909323-34909382,34909602-34909853,
           34910385-34910549,34910589-34910849,34911267-34912307,
           34913398-34913457,34914055-34914165,34914448-34914534,
           34915227-34915300,34915397-34915490,34915644-34915689,
           34916397-34916521
          Length = 2501

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 648 WALSALVMVWWGISYEGVTEPYFCEKGIKHRHKCIKI 538
           W +   V VWW  ++E V  PY C   I    +C K+
Sbjct: 112 WQVGECVAVWWRPNFETVMYPY-CPPHITKPKECKKL 147


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 317 YSKRHDNLESLKQSVRLAVKNFPWKKCVLLLITGLND*RTVLQPMETTS 171
           +SK  D L +++Q + + + NF   +  +  +T L +  T+LQ    T+
Sbjct: 167 FSKATDVLATVQQILSIGISNFVTSRLTVAAMTELQELHTILQSFTLTN 215


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 121  HTVKVINVICNRIFFPLSQYLWQD*VYKNELLFVSLGKT 5
            +T+K  +++C R FF L   +W+D   K+ L  +    T
Sbjct: 2095 NTIKYYSILCERRFFELVFLVWRDETPKSLLCILDSATT 2133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,101
Number of Sequences: 37544
Number of extensions: 347745
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)