Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00164
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11720.1 68417.m01870 hypothetical protein                          29   2.1  
At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS cla...    28   4.8  
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)...    27   8.4  

>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 515 APYNTMFNNQEWFFQQDSAPGHKARSTQSWLETNVSDFIRAED 387
           +PY +  +NQ W F++++ P   +      L TN+   +RA+D
Sbjct: 303 SPYWSCLHNQLWNFRENAGPHSFSIGVTETLNTNLMIELRADD 345


>At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 466 TRRQVIKLGLRSLGWK--RTFRTSSELKTGRCLVPILIRWI 350
           TRR  I    + L  +  RTF+   ELK GR + P LIR I
Sbjct: 22  TRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAI 62


>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
           identical to SP|Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family
          Length = 266

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -3

Query: 467 DSAPGHKARST--QSWLETNVSDFIRAEDWPLSSPDLNPLDYDL*SVLESTAYSKRHDNL 294
           + AP  +A +   Q +++  +SD+I  +   L      PLD+      E TA+S RH   
Sbjct: 77  NKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILF---FYPLDFTFVCPTEITAFSDRHSEF 133

Query: 293 ESLKQSV 273
           E L   V
Sbjct: 134 EKLNTEV 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,934
Number of Sequences: 28952
Number of extensions: 304804
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)