Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00163
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 126 3e-30
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 126 3e-30
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 2.5
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 26 4.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.7
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 7.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.9
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.9
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 126 bits (304), Expect = 3e-30
Identities = 88/221 (39%), Positives = 116/221 (52%), Gaps = 5/221 (2%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFVD--VLLTPISRSWLLLLCAG-- 371
FPM QGVL RVRLL+ RA H R + E + V ++ ++ L ++ G
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119
Query: 372 -CPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRHK 548
PG + + K P R+ + + R + R+ P KEGK KP K
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVR--QFVIRREVVPKKEGK---KPYTK 174
Query: 549 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671
APKIQRLVTP LQ AE+A+L+
Sbjct: 175 APKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215
Score = 85.8 bits (203), Expect = 5e-18
Identities = 38/54 (70%), Positives = 47/54 (87%)
Frame = +1
Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 528
QG Q+IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 116 QGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 66.1 bits (154), Expect = 4e-12
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +2
Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRR 370
GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQ 116
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 126 bits (304), Expect = 3e-30
Identities = 88/221 (39%), Positives = 112/221 (50%), Gaps = 5/221 (2%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFVDVLLTPISRSWLLLLCA----- 368
FPM QGVL RVRLL+ RA H R + E + V + + L L
Sbjct: 61 FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119
Query: 369 GCPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRHK 548
PG + + K P R+ + + R + R+ P KEGK KP K
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVR--QFVIRREVVPKKEGK---KPYTK 174
Query: 549 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671
APKIQRLVTP LQ AE+A+L+
Sbjct: 175 APKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLM 215
Score = 85.8 bits (203), Expect = 5e-18
Identities = 38/54 (70%), Positives = 47/54 (87%)
Frame = +1
Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 528
QG Q+IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 116 QGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 66.5 bits (155), Expect = 3e-12
Identities = 29/37 (78%), Positives = 33/37 (89%)
Frame = +2
Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRR 370
GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++
Sbjct: 80 GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQ 116
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 334 QSLGLGSCYCAQGAQEIPGLTDG 402
QS + S YC G+ IP L DG
Sbjct: 409 QSTDVASKYCDSGSNNIPSLVDG 431
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +1
Query: 334 QSLGLGSCYCAQGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQP 513
+++ + C C + + PG+ + P PK +I + S+ RR +++P
Sbjct: 94 ETIFVSGCLCGLSSVDEPGMDHADYPWDTVPKAVDRIFR----SQNWHARRQKQFHLMKP 149
Query: 514 RKEKKML 534
+E+K L
Sbjct: 150 AEERKQL 156
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 552 VPYVWV*HFLFLPWLEHAFDDITTYIIFFAKVEQLTDFGSTF 427
+ +V +FL L W FDD ++FF ++T++ F
Sbjct: 148 IAFVCSPNFLTLKWNSSLFDDDLARLLFFMINSKITNYDLPF 189
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Frame = +3
Query: 45 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 224
P LFE + Y +R+ + ++L EW G++ V D + + +
Sbjct: 319 PRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREM 377
Query: 225 LTNSRV-----RLLMQRATHVTDRAAMERENVNQFVD 320
L +++ + L++R + + A ++EN F D
Sbjct: 378 LQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 150 DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFVDVLL 329
DEW GG DK G ++ +L R+ +++ + +E+E ++ V+
Sbjct: 1055 DEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIK 1114
Query: 330 TPIS 341
P+S
Sbjct: 1115 CPLS 1118
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 44 PGNGMPEVVRSGGRAQASYLLR 109
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,885
Number of Sequences: 5004
Number of extensions: 53858
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -