BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00163 (673 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 125 4e-29 07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 121 5e-28 09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 30 1.9 11_01_0125 + 1018059-1018403 29 4.5 06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 5.9 >03_03_0207 - 15455163-15455389,15455623-15455895,15455991-15456099, 15456186-15456243,15457002-15457066,15457190-15457195 Length = 245 Score = 125 bits (301), Expect = 4e-29 Identities = 85/222 (38%), Positives = 114/222 (51%), Gaps = 6/222 (2%) Frame = +3 Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203 MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60 Query: 204 FPMKQGVLTNSRVRLLMQRAT---HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCAG- 371 FPMKQGVLT+ RVRLL+ R T R ER + ++ +S L+++ G Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120 Query: 372 --CPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRH 545 PG + + + P R+ + + R + R+T +N K Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFT-----TKNGKKVS 175 Query: 546 KAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671 KAPKIQRLVTP+ LQ S AEY KLL Sbjct: 176 KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLL 217 Score = 67.7 bits (158), Expect = 8e-12 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%) Frame = +1 Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN- 537 +G ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R + KK+ Sbjct: 118 KGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKA 177 Query: 538 PDIRHL 555 P I+ L Sbjct: 178 PKIQRL 183 Score = 52.0 bits (119), Expect = 4e-07 Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 2/40 (5%) Frame = +2 Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRR 370 +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV++ Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKK 118 >07_03_1309 + 25669394-25669399,25669520-25669584,25670543-25670600, 25670683-25670791,25670872-25671144,25671348-25671589 Length = 250 Score = 121 bits (292), Expect = 5e-28 Identities = 84/222 (37%), Positives = 113/222 (50%), Gaps = 6/222 (2%) Frame = +3 Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203 MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60 Query: 204 FPMKQGVLTNSRVRLLMQRAT---HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCAG- 371 FPMKQGVLT RVRLL+ R T R ER + ++ +S L+++ G Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120 Query: 372 --CPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRH 545 PG + + + P R+ + + R + R+T +N K Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFT-----TKNGKKVS 175 Query: 546 KAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671 KAPKIQRLVTP+ LQ S AEY KLL Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLL 217 Score = 69.3 bits (162), Expect = 3e-12 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 3/66 (4%) Frame = +1 Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN- 537 +G ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R + KK+ Sbjct: 118 KGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKA 177 Query: 538 PDIRHL 555 P I+ L Sbjct: 178 PKIQRL 183 Score = 52.0 bits (119), Expect = 4e-07 Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 2/40 (5%) Frame = +2 Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRR 370 +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV++ Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKK 118 >09_04_0727 + 19765175-19765384,19765523-19765595,19766476-19766570, 19766666-19768450,19768533-19768721,19768816-19768958, 19769075-19769320,19769975-19770059,19770117-19770191, 19770304-19770369,19770466-19770712,19770824-19771242 Length = 1210 Score = 29.9 bits (64), Expect = 1.9 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +2 Query: 179 RWRQRQARIPDE-TGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRG 319 R+R + ++ DE + RP ++ S+S + PRR+G R R+S+RG Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170 >11_01_0125 + 1018059-1018403 Length = 114 Score = 28.7 bits (61), Expect = 4.5 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 155 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGC 322 +EG+ RWR+ AR RP + S G + G K +++RGC Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112 >06_03_0734 - 23980576-23980671,23980799-23981338,23981493-23981714, 23981791-23982144,23982460-23982546 Length = 432 Score = 28.3 bits (60), Expect = 5.9 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +2 Query: 230 KQPCSSSDAKGHSCYRPRRDGERKRK 307 K PCSS+ G C+ R + KR+ Sbjct: 14 KSPCSSAGGGGRGCHNERGSADHKRR 39 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,411,813 Number of Sequences: 37544 Number of extensions: 406140 Number of successful extensions: 1254 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1254 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1703141568 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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