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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00163
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   125   4e-29
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   121   5e-28
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    30   1.9  
11_01_0125 + 1018059-1018403                                           29   4.5  
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817...    28   5.9  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  125 bits (301), Expect = 4e-29
 Identities = 85/222 (38%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT---HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCAG- 371
           FPMKQGVLT+ RVRLL+ R T       R   ER   +    ++   +S   L+++  G 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 372 --CPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRH 545
              PG +  +  +   P R+    +     +    R   +  R+T        +N K   
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFT-----TKNGKKVS 175

Query: 546 KAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671
           KAPKIQRLVTP+ LQ                 S  AEY KLL
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLL 217



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
 Frame = +1

Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN- 537
           +G  ++PGLTD   PR  GPKRASKIRKLFNL+K+DDVR+YV   +R    +  KK+   
Sbjct: 118 KGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKA 177

Query: 538 PDIRHL 555
           P I+ L
Sbjct: 178 PKIQRL 183



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRR 370
           +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV++
Sbjct: 79  RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKK 118


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  121 bits (292), Expect = 5e-28
 Identities = 84/222 (37%), Positives = 113/222 (50%), Gaps = 6/222 (2%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT---HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCAG- 371
           FPMKQGVLT  RVRLL+ R T       R   ER   +    ++   +S   L+++  G 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 372 --CPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRH 545
              PG +  +  +   P R+    +     +    R   +  R+T        +N K   
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFT-----TKNGKKVS 175

Query: 546 KAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671
           KAPKIQRLVTP+ LQ                 S  AEY KLL
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLL 217



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
 Frame = +1

Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN- 537
           +G  ++PGLTD   PR  GPKRASKIRKLFNLSK+DDVR+YV   +R    +  KK+   
Sbjct: 118 KGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKA 177

Query: 538 PDIRHL 555
           P I+ L
Sbjct: 178 PKIQRL 183



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRR 370
           +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV++
Sbjct: 79  RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKK 118


>09_04_0727 +
           19765175-19765384,19765523-19765595,19766476-19766570,
           19766666-19768450,19768533-19768721,19768816-19768958,
           19769075-19769320,19769975-19770059,19770117-19770191,
           19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 179 RWRQRQARIPDE-TGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRG 319
           R+R  + ++ DE + RP ++  S+S +       PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170


>11_01_0125 + 1018059-1018403
          Length = 114

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 155 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGC 322
           +EG+    RWR+  AR      RP  +  S     G    +    G  K +++RGC
Sbjct: 57  VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112


>06_03_0734 -
           23980576-23980671,23980799-23981338,23981493-23981714,
           23981791-23982144,23982460-23982546
          Length = 432

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 230 KQPCSSSDAKGHSCYRPRRDGERKRK 307
           K PCSS+   G  C+  R   + KR+
Sbjct: 14  KSPCSSAGGGGRGCHNERGSADHKRR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,411,813
Number of Sequences: 37544
Number of extensions: 406140
Number of successful extensions: 1254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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