Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00163
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 125 4e-29
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 121 5e-28
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 30 1.9
11_01_0125 + 1018059-1018403 29 4.5
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 5.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 125 bits (301), Expect = 4e-29
Identities = 85/222 (38%), Positives = 114/222 (51%), Gaps = 6/222 (2%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRAT---HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCAG- 371
FPMKQGVLT+ RVRLL+ R T R ER + ++ +S L+++ G
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120
Query: 372 --CPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRH 545
PG + + + P R+ + + R + R+T +N K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFT-----TKNGKKVS 175
Query: 546 KAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671
KAPKIQRLVTP+ LQ S AEY KLL
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLL 217
Score = 67.7 bits (158), Expect = 8e-12
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Frame = +1
Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN- 537
+G ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R + KK+
Sbjct: 118 KGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKA 177
Query: 538 PDIRHL 555
P I+ L
Sbjct: 178 PKIQRL 183
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
Frame = +2
Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRR 370
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV++
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKK 118
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 121 bits (292), Expect = 5e-28
Identities = 84/222 (37%), Positives = 113/222 (50%), Gaps = 6/222 (2%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRAT---HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCAG- 371
FPMKQGVLT RVRLL+ R T R ER + ++ +S L+++ G
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120
Query: 372 --CPGNSWID*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPAKEGKENAKPRH 545
PG + + + P R+ + + R + R+T +N K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFT-----TKNGKKVS 175
Query: 546 KAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671
KAPKIQRLVTP+ LQ S AEY KLL
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLL 217
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Frame = +1
Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN- 537
+G ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R + KK+
Sbjct: 118 KGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKA 177
Query: 538 PDIRHL 555
P I+ L
Sbjct: 178 PKIQRL 183
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/40 (62%), Positives = 32/40 (80%), Gaps = 2/40 (5%)
Frame = +2
Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRR 370
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV++
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKK 118
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 179 RWRQRQARIPDE-TGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRG 319
R+R + ++ DE + RP ++ S+S + PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170
>11_01_0125 + 1018059-1018403
Length = 114
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 155 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGC 322
+EG+ RWR+ AR RP + S G + G K +++RGC
Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 230 KQPCSSSDAKGHSCYRPRRDGERKRK 307
K PCSS+ G C+ R + KR+
Sbjct: 14 KSPCSSAGGGGRGCHNERGSADHKRR 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,411,813
Number of Sequences: 37544
Number of extensions: 406140
Number of successful extensions: 1254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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