Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00163
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)               83   1e-16
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.017
SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.5  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   4.5  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    28   7.9  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/54 (70%), Positives = 45/54 (83%)
 Frame = +1

Query: 367 QGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 528
           +G Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+YV++R L P KE K
Sbjct: 83  KGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPL-PEKEGK 135



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +3

Query: 126 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQR 260
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+ +
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 42/81 (51%), Positives = 52/81 (64%), Gaps = 9/81 (11%)
 Frame = +2

Query: 155 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------AKGHSCYRPRRDGERKRK 307
           + G C    W+    RI    D+ G P KQ   ++       +KGHSCYRPRR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 308 SVRGCIVDANLSVLALVIVRR 370
           SVRGCIVD+ LSVL+LVIV++
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKK 83



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 27/55 (49%), Positives = 29/55 (52%)
 Frame = +3

Query: 507 PAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLL 671
           P KEGK   K + KAPKIQRLVTPVVLQ                    A+YAKLL
Sbjct: 130 PEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLL 181


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 251 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 102
           Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_5805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 364 AQGAQEIPGLTDGNVPRRLGPKRASK--IRKLFNLSKEDDVRRYVVKRVLQPRKEKKMLN 537
           AQG     G+  G  P +  P+R  K  I KL N+    ++ R ++ R +  +  K+  N
Sbjct: 192 AQGNYNRTGVNQGGKPAKANPRRRQKVVINKLKNVQALRNMGRQMLNRAVNAQANKRQQN 251

Query: 538 PDIRHLRSR 564
              +  R +
Sbjct: 252 TQAQQGRRK 260


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 215
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 400 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 498
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 620 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSI 528
           L+QSE+ T  T  NY    P++L C   GF +
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,825,673
Number of Sequences: 59808
Number of extensions: 458974
Number of successful extensions: 1293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)