Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00162
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   1.8  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   1.8  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   3.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   4.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   9.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   9.6  

>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 365 HLVSRSLWMATEDPKRVFLGAKSA 294
           H+V  + W+  +DPK + L  + A
Sbjct: 323 HIVKGNQWLGFDDPKSIQLKVEFA 346


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 365 HLVSRSLWMATEDPKRVFLGAKSA 294
           H+V  + W+  +DPK + L  + A
Sbjct: 323 HIVKGNQWLGFDDPKSIQLKVEFA 346


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 365 HLVSRSLWMATEDPKRV 315
           H+V  + W+  +DPK +
Sbjct: 322 HIVKGNQWLGFDDPKSI 338


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 365 HLVSRSLWMATEDPKRVFLGAKSA 294
           +L   +LW+  ++PK V L A+ A
Sbjct: 315 YLYDDTLWVGFDNPKSVALKAQYA 338


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 384 GHIMRCSGIRIHPRSASS 437
           GHI+  +GI+  P   S+
Sbjct: 505 GHILTINGIKADPEKISA 522


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 10/42 (23%), Positives = 15/42 (35%)
 Frame = +1

Query: 202 PEFPADQAARKDPSAAAEVKGLLSRFGSQAQALFAPKKTRFG 327
           P++   Q  +    A   + G     G  A  + AP    FG
Sbjct: 315 PDYLNSQTTQNHMQAMNNMAGTYQMTGYSAMGMAAPHHQNFG 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,599
Number of Sequences: 336
Number of extensions: 2655
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)