Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00162
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.34 
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   1.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   2.4  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   2.4  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   2.4  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   5.6  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   7.3  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    24   9.7  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 210 KLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSL 76
           ++  VTN  S    P T+S+ +  FD++  + ++ DSF+ + + L
Sbjct: 559 EVETVTNDPSFSQQPGTHSRILRNFDAISSIDSIPDSFSDSAVDL 603


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 293 KHFSPPRRHVLDLRWPSTNSARPSGLSTMHRTYYALFWNQDSSSKCELKTL 445
           KH  P  +  L   W    S   + L++   T++ L  NQ+ +S+   +TL
Sbjct: 430 KHLVPENKSKLQYVWQKKESLPYANLTSASNTHFFLSENQNDTSERLTRTL 480


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 359 PSGLSTMHRTYYALFWNQDSSSKCEL 436
           PSG S + +T YAL W   S +K  +
Sbjct: 530 PSGTSFVVKTLYALSWAHSSKTKLNI 555


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 425 SRMNPDSRTAHNMSCASCLNHLVSRSLW 342
           S +NP S  A N+S  S  NHL S  L+
Sbjct: 442 STLNPSSLGASNLSQPSLANHLSSSGLF 469


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +2

Query: 50  CCLLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPP 229
           C  +YV+   EST    E  RL +I   SN++   E +T  G    R        +   P
Sbjct: 96  CEAIYVLQNFESTDFNKEKERLVSIILESNNKSNNELITKNGYGNTRLDLLNQLSEYISP 155

Query: 230 EKTLAPQPR 256
           E  L P+ R
Sbjct: 156 E-ILLPKRR 163


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 287 RLKHFSPPRRHVLDLRWPSTNSARPSGLSTMHRTYYALF---WNQDSSSKCELKTL 445
           +LK   P  + + +   P+  S    G+S ++R   A+F   W +DSSS+  L+ +
Sbjct: 475 QLKSIFPFAKWLQEAAVPNMASINDIGISRVYRRRIAIFLSQWIEDSSSEQLLEVI 530


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 205 EFPADQAARKDPSAAAEVKGLLSRFG 282
           + P DQA R DP       G   RFG
Sbjct: 428 DMPLDQAGRPDPQTYLHRIGRTGRFG 453


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 283 SQAQALFAPKKTRFGSSVAIHKLRETKWFKHDAQDI 390
           S  ++LF    T F   + +HKL   +W++  + D+
Sbjct: 433 SLPRSLFTQPFTEFTRQLFLHKLTSREWWEKLSDDL 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,199
Number of Sequences: 5004
Number of extensions: 41228
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)