Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00162
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 30 1.0
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994... 30 1.0
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 30 1.0
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 30 1.0
09_02_0477 - 9737851-9739356 29 2.4
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 28 3.1
06_01_0887 + 6803937-6804030,6804101-6804204 28 4.2
12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593 27 5.5
06_03_1259 - 28800954-28802468 27 5.5
03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612 27 5.5
10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719... 27 7.3
04_03_0368 + 15004949-15005659,15005789-15005848 27 7.3
02_03_0068 + 14711891-14712418 27 9.6
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 279 REPGSSTFRPQEDTFWIFGGHPQ 347
+ G TFR + D FWI HP+
Sbjct: 279 KRTGIQTFRREHDRFWILAAHPE 301
>05_04_0339 +
20397591-20397627,20398494-20398526,20399210-20399438,
20402055-20402184,20402251-20402532
Length = 236
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +2
Query: 56 LLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPPEK 235
LL V + F ++ R R + ++N +FE VTG + + S + P
Sbjct: 82 LLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVVTGAAKKQTKEKAPNSTNKPNKPSS 141
Query: 236 TLAPQPR*RAYCP 274
+ P+P + P
Sbjct: 142 KMQPRPESHSKAP 154
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 279 REPGSSTFRPQEDTFWIFGGHPQ 347
+ G TFR + D FWI HP+
Sbjct: 279 KRTGIQTFRREHDRFWILSAHPE 301
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 279 REPGSSTFRPQEDTFWIFGGHPQ 347
+ G TFR + D FWI HP+
Sbjct: 279 KRTGIQTFRREHDRFWILSAHPE 301
>09_02_0477 - 9737851-9739356
Length = 501
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 202 PEFPADQAARKDPSAAAEVKGLLSRFGSQAQALFAPKKTRFGSSVAIHKLRE 357
P F A AA + P++ L A L PK + G+S H +RE
Sbjct: 120 PRFEASVAAMRPPASFLVADAFLHWTNDSAAVLGVPKVSFLGTSTFAHVMRE 171
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 221 KPPEKT--LAPQPR*RAYCPDSGARLKHFSPPRRHVLDLRWPSTNSARPSGLSTMHR 385
+PP+K L P PR RA + A H +P R H+ + P +A + LS M +
Sbjct: 126 QPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHLSGVAAPP--AAAANALSIMRK 180
>06_01_0887 + 6803937-6804030,6804101-6804204
Length = 65
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 233 KTLAPQPR*RAYCPDSGARLKHFSPPRRH 319
K LA R + +C GAR+ FSPPR H
Sbjct: 33 KELASSLRNKKFC--KGARVHTFSPPRHH 59
>12_01_1103 + 11624736-11624997,11625308-11625400,11625559-11625593
Length = 129
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 103 VAKIKNNF*TIEFENCF*IRHRSG 174
+A+I+NNF + ENC I H+SG
Sbjct: 75 LAEIRNNFDILSRENCRGIGHQSG 98
>06_03_1259 - 28800954-28802468
Length = 504
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 138 FDSLEIVLNLRDSFAANVLSLLQITYNKQHFHNICGAWYRAY 13
FD+L + LRD A+ LL+ ++H+ + AW R Y
Sbjct: 220 FDTLAVDPALRDDIRAD---LLRFAARREHYARVGRAWKRGY 258
>03_02_0268 - 6994095-6994555,6996873-6996982,6997237-6998612
Length = 648
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 124 NCS*SSRLVRGKCTLTSTNHVQQAALSQYL-WR 29
NC+ S + KC LT T H+Q AA +Q + W+
Sbjct: 442 NCT--STVFISKCKLTKTIHIQNAAYTQLIQWQ 472
>10_08_0351 -
17069974-17070232,17070470-17071751,17071908-17071969,
17072109-17072181,17072399-17072466,17073023-17073207,
17073311-17073452,17073665-17073720,17074003-17074056,
17074679-17074782,17075012-17075112,17075717-17075790,
17076482-17076560,17076668-17076744,17076875-17076931,
17077058-17077168,17077254-17077334
Length = 954
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 368 LSTMHRTYYALF---WN-QDSSSKCELKTLCRQI 457
LS H TY+ALF W D +LK CRQI
Sbjct: 174 LSGQHSTYHALFPRAWTVYDGEPDPDLKISCRQI 207
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 334 PKIQNVSSWGRKVLEPGSRIWTVGP 260
P+ + + + GR++ PGSRIW P
Sbjct: 144 PRRRRLLTAGRQIWPPGSRIWPPAP 168
>02_03_0068 + 14711891-14712418
Length = 175
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 211 PADQAARKDPSAAAEVKGLLSRFG 282
P D+AA DP++AA V ++ R G
Sbjct: 124 PVDRAADPDPTSAAAVSSVIDRRG 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,353,114
Number of Sequences: 37544
Number of extensions: 316029
Number of successful extensions: 943
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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