Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00162
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)                      31   0.61 
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)                     29   1.8  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_28895| Best HMM Match : p450 (HMM E-Value=0)                        28   4.3  
SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)                 27   5.6  
SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   27   7.5  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
          Length = 1595

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 308  PRRHVLDLRWPSTNSARPSGLSTMHRTYYALFWNQDSSSKCELKT 442
            P + +LDL W     A    L  +H     + WN D+ +K   KT
Sbjct: 1209 PSKTILDLEWLGAQDACHDLLVALHAPSSMILWNADTGTKLWKKT 1253


>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 709

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 200 CRSFQQIK--PPEKTLAPQPR*RAYCPDSGAR 289
           CR    +   PPEKTL+P P    +C  SG R
Sbjct: 249 CRVLMSVMATPPEKTLSPIPHRIRFCVKSGGR 280


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +2

Query: 158 FVTGVGSMEARFVTCRSFQQIKPPEKTLAPQPR*RAYCPDSGARLK--HFSPPRRHVLDL 331
           F+   GS E   +T R+F  +  PE  +APQ        ++   LK  +   PRR   DL
Sbjct: 547 FLKSTGSSE---ITTRNFMSVMDPESEIAPQGVTSVGDYETSQSLKSPNTMKPRRTYKDL 603

Query: 332 RWPSTNS-ARPSGLSTMHRTYY 394
           +  +T +   PS  ST   +++
Sbjct: 604 KAHATRTQILPSKPSTFASSFH 625


>SB_28895| Best HMM Match : p450 (HMM E-Value=0)
          Length = 492

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 120 VLNLRDSFAANVLSLLQITYNKQHFHNICGAWYRA 16
           +  LRD    N+L+  + T+N+ H  ++  A+ +A
Sbjct: 235 IAELRDKLMGNILTFHKETFNENHIRDLTDAFLKA 269


>SB_53752| Best HMM Match : TSP_1 (HMM E-Value=8.5e-11)
          Length = 635

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 255 GEGPTVQIREPGSSTFRPQEDTFW 326
           G+GPTV I   G + F    D FW
Sbjct: 496 GKGPTVTIVRVGKNVFGGYSDNFW 519


>SB_15095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -1

Query: 240 RVFSGGLICWKLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSLLQITY 61
           ++ +G +  W           +   ++  KTIL FDS E+ L L       V+  LQ   
Sbjct: 238 KLMAGQIDLWATGDPAGRYLAKQDGISGLKTILRFDSAELYLALNKEVPDEVVQKLQAEL 297

Query: 60  NK 55
           +K
Sbjct: 298 DK 299


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 342 PQTPRDQVV*ARCTGHIMRCSGIRIHPRSASSRP 443
           PQ+ +D+   A CT +I +CS     P S ++RP
Sbjct: 822 PQSDKDR---ANCTRYIPKCSSSATTPPSKNARP 852


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 425  SRMNPDSRTAHNMSCASCLNH 363
            SR+  +  T HN + A CLNH
Sbjct: 1010 SRLYEEGVTTHNANSAECLNH 1030


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,949,008
Number of Sequences: 59808
Number of extensions: 338511
Number of successful extensions: 889
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)