Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00162
         (459 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064363-1|AAH64363.1|  254|Homo sapiens BARX1 protein protein.        30   3.3  
AL357073-1|CAH71535.1|  225|Homo sapiens BarH-like homeobox 1 pr...    30   4.4  
AK125190-1|BAC86077.1|  188|Homo sapiens protein ( Homo sapiens ...    29   7.7  
AK090428-1|BAC03409.1|  339|Homo sapiens FLJ00345 protein protein.     29   7.7  
AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein.           29   7.7  

>BC064363-1|AAH64363.1|  254|Homo sapiens BARX1 protein protein.
          Length = 254

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 29/87 (33%), Positives = 40/87 (45%)
 Frame = +1

Query: 160 RHRSGFNGSEVRNLPEFPADQAARKDPSAAAEVKGLLSRFGSQAQALFAPKKTRFGSSVA 339
           R+RS F   E+   P  P   A    P+AAA   G L +FG   QAL A +   F S +A
Sbjct: 25  RYRS-FMIEEILTEPPGPKGAA----PAAAAAAAGELLKFG--VQALLAARP--FHSHLA 75

Query: 340 IHKLRETKWFKHDAQDILCAVLESGFI 420
           + K  +   FK     + C+ L S  +
Sbjct: 76  VLKAEQAAVFKFPLAPLGCSGLSSALL 102


>AL357073-1|CAH71535.1|  225|Homo sapiens BarH-like homeobox 1
           protein.
          Length = 225

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 25/74 (33%), Positives = 35/74 (47%)
 Frame = +1

Query: 199 LPEFPADQAARKDPSAAAEVKGLLSRFGSQAQALFAPKKTRFGSSVAIHKLRETKWFKHD 378
           L E P  + A   P+AAA   G L +FG   QAL A +   F S +A+ K  +   FK  
Sbjct: 6   LTEPPGPKGAA--PAAAAAAAGELLKFG--VQALLAARP--FHSHLAVLKAEQAAVFKFP 59

Query: 379 AQDILCAVLESGFI 420
              + C+ L S  +
Sbjct: 60  LAPLGCSGLSSALL 73


>AK125190-1|BAC86077.1|  188|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43200 fis, clone FEBRA2007793. ).
          Length = 188

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 364 TWSRGVCGWPPKIQNVSSWGRKVLEPGSRIWTVGP 260
           TW  G C WP  + N + W R+ L     +W   P
Sbjct: 80  TWPGGQCPWP--LANRTLWNRRNLGSCPALWPASP 112


>AK090428-1|BAC03409.1|  339|Homo sapiens FLJ00345 protein protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 281 GARLKHFSPPRRHVLDLRWPST--NSARPSGLSTMHRTYYALFWNQDSS 421
           G  L H  PP    L L WP T    +  SG   + R+ Y L W++ S+
Sbjct: 9   GCSLPHLPPPPACALLLPWPRTWVFPSPASGWRWLTRSRYPLTWSRTST 57


>AF319995-1|AAM73554.1| 1087|Homo sapiens helicase B protein.
          Length = 1087

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 278  SGARLKHFSPPRRHVLDLRWPSTNSARPSGLSTMHRTYYALFWNQDSS 421
            SGA    F  PR+   D   PST SA P  + T H     + W++ SS
Sbjct: 958  SGAPPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASS 1005


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,151,966
Number of Sequences: 237096
Number of extensions: 1703417
Number of successful extensions: 3680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3680
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)