Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00162
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    30   0.70 
U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +1

Query: 187 EVRNLPEFPADQAARKDPSAAAEVKGLLSRFGSQAQALFAPKKTRFGSSVAIHKLRETKW 366
           E + +P+ P  Q A  +P      +   + FG  A A  +   T      A     +T W
Sbjct: 109 EPQQIPQIPVFQPAAYNPPNYVAPQQRANNFGEPAAAADSRPLTEEEQLAAERPTEDTVW 168

Query: 367 F-KHDAQDILCAVLESGFILEVRAQDPLPPD 456
               D  D+  A+L + F L     +  PPD
Sbjct: 169 IDSDDDTDVEEAILRANFWLPYSDHNYDPPD 199


>U27312-9|AAA68252.1|  239|Caenorhabditis elegans Hypothetical
           protein F26A1.11 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 108 RDSFAANVLSLLQITYNKQHFHNIC 34
           R SF  NVL  LQ  Y  ++F NIC
Sbjct: 214 RASFVVNVLYNLQKLYKNKYFFNIC 238


>Z82284-1|CAB05287.1|  226|Caenorhabditis elegans Hypothetical
           protein T27E7.1 protein.
          Length = 226

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 206 SFQQIKPPEKTLAPQPR*RAYCPDSGARLKHFSP 307
           SF+  KPP   +  QP+   Y P  G +  H  P
Sbjct: 71  SFKSTKPPRGLVYYQPKNYPYKPGKGGKYMHADP 104


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 88  CTLTSTNHVQQAALSQYLWRVVSSVSQY 5
           C  TS NH QQ   + Y+W+ + ++  +
Sbjct: 183 CQRTSENHKQQQRSNNYIWQKIENLFSF 210


>U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical
           protein F10G7.3 protein.
          Length = 275

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 201 QVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSLLQITYNKQHFHNICGAWY 22
           QV + A + P P    K + + D  +I     D      + LL+  YN Q F N+   W+
Sbjct: 56  QVLDSALVGPIPEGRHKFVFDADHPDISKIPVDDIVGVSVLLLRCKYNDQEFINM--GWF 113

Query: 21  RAYRST 4
            A   T
Sbjct: 114 VANEYT 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,701,475
Number of Sequences: 27780
Number of extensions: 246447
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)