Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00162
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g42430.1 68414.m04893 expressed protein 33 0.12
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho... 29 1.1
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 29 2.0
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 29 2.0
At1g06630.1 68414.m00700 F-box family protein contains F-box dom... 28 2.6
At5g66530.1 68418.m08388 aldose 1-epimerase family protein simil... 28 3.5
At4g20190.1 68417.m02952 hypothetical protein 28 3.5
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 27 4.6
At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein si... 27 4.6
At3g24180.1 68416.m03035 expressed protein contains Pfam domain ... 27 6.1
At5g56910.1 68418.m07104 expressed protein 27 8.1
At2g47260.1 68415.m05901 WRKY family transcription factor contai... 27 8.1
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-... 27 8.1
>At1g42430.1 68414.m04893 expressed protein
Length = 435
Score = 32.7 bits (71), Expect = 0.12
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 283 SQAQALFAPKKTRFGSSVAIHKLRETKWFKHD 378
S A +L K RFG + H+LR TKWFK D
Sbjct: 7 SSAISLLDIKLRRFGVGASNHELRLTKWFKGD 38
>At3g28560.1 68416.m03566 hypothetical protein similar to
mitochondrial protein-like protein (GI:11559424)
[Cucumis sativus]
Length = 257
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 87 HLPRTSRED*EQFLNYRIRELFLN-SSQEWVQWKRGS 194
+L RE E L R R+L+ N SS EW+ W+ G+
Sbjct: 154 YLDHVLREGKEIGLKKRERKLYTNNSSHEWISWRLGT 190
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 279 REPGSSTFRPQEDTFWIFGGHPQ 347
+ G TFR + D FWI HP+
Sbjct: 279 KRTGIQTFRREHDRFWILAVHPE 301
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 279 REPGSSTFRPQEDTFWIFGGHPQ 347
+ G TFR + D FWI HP+
Sbjct: 279 KRTGLQTFRREHDRFWILAVHPE 301
>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/65 (26%), Positives = 37/65 (56%)
Frame = +2
Query: 56 LLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPPEK 235
+L ++ ++ + S++ RT+ KL ++ + V+G+G EA +V SF+ + ++
Sbjct: 25 ILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVSGMGEQEASYVFPESFKDL--VDR 82
Query: 236 TLAPQ 250
T+A Q
Sbjct: 83 TVALQ 87
>At5g66530.1 68418.m08388 aldose 1-epimerase family protein similar
to apospory-associated protein C; APOC [Chlamydomonas
reinhardtii] GI:6970044; contains Pfam profile PF01263:
Aldose 1-epimerase
Length = 307
Score = 27.9 bits (59), Expect = 3.5
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2
Query: 356 SRSLW-MATEDPKRVFLGAKSA*AWLP--NLDSRPFTSAAALGSFRAA*SAGNS 204
SR++W A + +V +GA S L N D +PF+ + AL ++ A SAG S
Sbjct: 144 SRAMWDFAFQALYKVIVGADSLSTELKITNTDDKPFSFSTALHTYFRASSAGAS 197
>At4g20190.1 68417.m02952 hypothetical protein
Length = 389
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 232 KDPSAAAEVKGLLSRFGSQA-QALFAPKKTRFGSS 333
K+P+ E+KG+L GS++ +++ +P+ RF +S
Sbjct: 322 KEPNLDKEIKGVLKTSGSKSRRSMESPRHVRFSTS 356
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 VRVHLPRTSRED*EQFLNYRIRELFLN-SSQEWVQWKRG 191
+ +L RE L R R+L+ N SSQEW W+ G
Sbjct: 157 IETYLDHVLREGKAIGLMNRERKLYTNNSSQEWYPWRSG 195
>At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein
similar to leucine zipper protein GI:10177020 from
[Arabidopsis thaliana] contains Pfam domain PF03081:
Exo70 exocyst complex subunit;
Length = 599
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 220 QAARKDPSAAAEVKGLLSRFGSQAQALFAPKKT--RFGSSV 336
+A KDPSAA ++ +LS +G+ P+ T R GS+V
Sbjct: 18 RALGKDPSAAGDILQILSGYGASGNRGGDPRPTPSRGGSNV 58
>At3g24180.1 68416.m03035 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 950
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 368 LSTMHRTYYALF---WN-QDSSSKCELKTLCRQI 457
L+ H TY+ALF W D ELK CRQI
Sbjct: 181 LNGQHSTYHALFPRAWTIYDGEPDPELKISCRQI 214
>At5g56910.1 68418.m07104 expressed protein
Length = 224
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 234 FSGGLICWKLRQVTNLASIEPT 169
F+ GL+CW T++AS PT
Sbjct: 124 FANGLLCWLTFWATDMASSAPT 145
>At2g47260.1 68415.m05901 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 337
Score = 26.6 bits (56), Expect = 8.1
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -2
Query: 416 NPDSRTAHNMSCASCLNHLVSRSLWMATEDPKRVFLGAKSA*AWLPNLDSRPFTSAAALG 237
+P R+ + + ASC V + + + DP V + + L SRP ++ G
Sbjct: 190 SPFPRSYYRCTTASCN---VKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFG 246
Query: 236 SFRAA*SAGN 207
S AA S GN
Sbjct: 247 SSGAASSLGN 256
>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 646
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 287 WLPNL-DSRPFTSAAALGSFRAA*SAGNSG 201
W N S P ++A++LG F A SAG SG
Sbjct: 505 WTRNTASSPPISAASSLGLFSAVGSAGTSG 534
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,133,660
Number of Sequences: 28952
Number of extensions: 236951
Number of successful extensions: 708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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