Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00161
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.4  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   4.4  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   5.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   7.8  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   7.8  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    25   7.8  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 169  DLLSNRFGEDEEAPIEVRGDGNLINRLNSYQS 264
            DL ++RF +  E P+++R    LI  +N +QS
Sbjct: 2216 DLKASRFMDIYEYPVQLREVVGLIQTINDFQS 2247


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 248 NRLIRLPSPRTSMGASSSSPNLFDSKSV 165
           N L  LP+P + + ++ SS NLF S S+
Sbjct: 207 NSLYPLPTPTSQLPSNLSSNNLFQSDSL 234


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 367 NKGKKKTQALKIMRRLQQILQQCLMFEFQYFF 462
           N GKK  + LKI+  + Q L+   + E  Y F
Sbjct: 292 NTGKKSVENLKILITIPQALKSVTVTEGNYIF 323


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = -1

Query: 534 SMVQGCFQIYRLRQSE*---GLACH----SEKKILKFEHQALLKNLLQPSHDFQCL 388
           S+++ CF +  +  SE    G  C+    S K  L   + ++L + LQP  DFQ +
Sbjct: 261 SLIEYCFSVLLILMSEENNNGTPCYNNYRSSKNTLPKNYFSILLSKLQPYSDFQII 316


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 487 FALSKSIYLKTSLNHRRQHGGHEWDWKFN*PYSISRH 597
           F  S+SIY+   +N    +  H+WD+  N    I  H
Sbjct: 117 FDKSQSIYIPRGINTESLNREHKWDFTPNKDLRIGDH 153


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 558 PFMSAMLSSMVQGCFQIYRLRQSE*GLACHSEKKILKFEHQALLKNLLQPSHDFQ 394
           P  + +L   V G   +Y  + S   +  +  + + K+ H+AL +   + +HDFQ
Sbjct: 32  PLPATLLGCAVLGVAAVYFAKPSP--IDENYPRSVAKYLHEALYRQKGENNHDFQ 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,072
Number of Sequences: 5004
Number of extensions: 63126
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)