Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00161
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    31   0.86 
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    28   6.0  
12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744...    28   8.0  

>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 546  AMLSSMVQGCFQIYRLRQSE*GLACHSEKKILKF---EHQALLKN 421
            A L  M  GC+ + + R     L CHS++K+  F    H+A++KN
Sbjct: 1099 ARLGIMAAGCYGLPQFRMRVFLLGCHSKEKLPPFPLPTHEAIVKN 1143


>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 223 GDGNLINRLNSYQSRTNPSGT*TGKLMRL*EKDPKPSSKDQTILS 357
           G+G   +   S Q R+N SG  TGK   + +K P PS   +T +S
Sbjct: 244 GEGPYASAAESLQ-RSNSSGNVTGKGNMIHKKPPYPSGSTKTAVS 287


>12_01_0811 -
           7440413-7440712,7441285-7441398,7441448-7441705,
           7441825-7441998,7442344-7442514,7442607-7442874,
           7443171-7443937,7444437-7445123
          Length = 912

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = +1

Query: 163 ETDLLSNRFGEDEEAPIEVRGDGNLINRLNSYQSRTNPSGT*TGKLMRL*EKDPKPSSKD 342
           +T+  S    E+EEAP   R DGNL  R  S +S+ +  G     +     + P  S ++
Sbjct: 193 DTEFASFTDDEEEEAPYPYRSDGNL--RAGSNRSQESLKGKDVRTVGNEGSRSPFDSQRE 250

Query: 343 QTILSIEINKGKKKTQALKIMR 408
               S ++   + +   +++ +
Sbjct: 251 MPSSSTKVRSEEVEKYPIQVQK 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,036
Number of Sequences: 37544
Number of extensions: 366402
Number of successful extensions: 800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)