Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00161
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)                    29   3.5  
SB_22056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
          Length = 721

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 376 KKKTQALKIMRRLQQILQQCLMFEFQYFFFGMAS*TSFALSKSIYLKTSLNHRRQHGGHE 555
           K   QA ++MR+ +++     +F    F    A   + A S+S  ++  + H R+H G E
Sbjct: 137 KSCVQACRVMRQGRRLY--VYLFIILTFLAVQAVHRARASSQSFDIRKKVKHHRRHNGSE 194

Query: 556 W 558
           W
Sbjct: 195 W 195


>SB_22056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 457 NIEIRTSSTVEEFVATVS*FSMLVFFFCLY 368
           N+ +R S  VEEF+A ++ +SM  + FC +
Sbjct: 372 NVCLRNSEEVEEFIALLA-YSMQSYLFCYH 400


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,865,444
Number of Sequences: 59808
Number of extensions: 417887
Number of successful extensions: 902
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)