Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00161
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    29   4.1  
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    27   9.5  

>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 103 FVKAQRPFYAGLSPIGYPAVETDLLSNRFGEDEEAPIEVRGDGNLIN 243
           F  A+R F+   +  G     TD +SN FG+D E+ +    D  +IN
Sbjct: 521 FKNAKRRFHPN-NAFGEDGNVTDYVSNNFGQDLESFMNYSNDEEMIN 566


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +3

Query: 327 TFQQRPNNFIDRN**RQKKNTSIENHETVA--TNSSTVLDVRISIFFFRNGKLDLIRFVE 500
           TF+++ N F+D N  +  KN     +ET+     + +V    I++   R+ ++  I + E
Sbjct: 411 TFEKKFNKFLDSNSLQLLKNNQSFVNETLKRFLETKSVPKFLITVNELRD-RIKAIDYKE 469

Query: 501 VYIFENI 521
           ++IF+N+
Sbjct: 470 IFIFQNL 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,295
Number of Sequences: 27780
Number of extensions: 340654
Number of successful extensions: 794
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)