Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00161
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54750.2 68416.m06058 expressed protein                             31   0.95 
At3g54750.1 68416.m06057 expressed protein                             31   0.95 
At4g29100.1 68417.m04165 ethylene-responsive family protein cont...    29   2.9  
At5g06900.1 68418.m00779 cytochrome P450 family protein                28   5.0  
At1g13710.1 68414.m01611 cytochrome P450 family protein similar ...    28   5.0  
At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 / FR...    28   6.7  
At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta...    27   8.8  

>At3g54750.2 68416.m06058 expressed protein 
          Length = 589

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 615 QYGTTFMPTNTIRLIKFPVPFMSAMLSSMVQGCFQIYR 502
           +Y   F+PT  + ++  PVPF +A LSS    C ++ +
Sbjct: 442 RYSFEFLPTADVPVLSSPVPFQNAALSSPEIKCSEMVK 479


>At3g54750.1 68416.m06057 expressed protein 
          Length = 589

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 615 QYGTTFMPTNTIRLIKFPVPFMSAMLSSMVQGCFQIYR 502
           +Y   F+PT  + ++  PVPF +A LSS    C ++ +
Sbjct: 442 RYSFEFLPTADVPVLSSPVPFQNAALSSPEIKCSEMVK 479


>At4g29100.1 68417.m04165 ethylene-responsive family protein
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 407

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/25 (52%), Positives = 20/25 (80%)
 Frame = -2

Query: 233 LPSPRTSMGASSSSPNLFDSKSVST 159
           LPSP TS  +SSSSP+L ++ ++S+
Sbjct: 67  LPSPATSSSSSSSSPSLPNNPNLSS 91


>At5g06900.1 68418.m00779 cytochrome P450 family protein 
          Length = 507

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = +3

Query: 267 NQPFWYLNWKAYEALRKRPQTFQQRPNNFIDRN**RQKKNTSIENHETVATNSSTVLDVR 446
           ++ FW+L     + L+KR +  + + +  I+R    ++  +S +N    AT    +LDV 
Sbjct: 223 SETFWFLKRLDLQGLKKRLKNARDKYDVIIERI--MEEHESSKKN----ATGERNMLDVL 276

Query: 447 ISIFFFRNGKLDLIR 491
           + I+  +N ++ L R
Sbjct: 277 LDIYEDKNAEMKLTR 291


>At1g13710.1 68414.m01611 cytochrome P450 family protein similar to
           cytochrome P450 78A1 (SP:P48420) GI:349717 from [Zea
           mays]
          Length = 517

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 276 FWYLNWKAYEALRKRPQTFQQRPNNFI 356
           FW+L W  ++ +RKR +      N F+
Sbjct: 242 FWFLRWFDFQGVRKRCRALVSEVNTFV 268


>At5g60910.1 68418.m07641 agamous-like MADS box protein AGL8 /
           FRUITFULL (AGL8) NAP1-1, Nicotiana tabacum,
           EMBL:AF009126; identical to SP:Q38876 Agamous-like MADS
           box protein AGL8 (Floral homeotic protein AGL8)
           (FRUITFULL){Arabidopsis thaliana} PMID:9502732,
           PMID:10648231; identical to cDNA agamous-like 8 (AGL8)
           GI:1004364
          Length = 242

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = +3

Query: 291 WKAYEALRKRPQTFQQRPNNFIDRN**RQKKNTSIENHETVATNSSTVLDVRISIFFFRN 470
           +++  AL+K+ +  Q   N+ + +   R+KK    E      +NSS+VL  +  +   R+
Sbjct: 148 FESISALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRD 207

Query: 471 GKLDLI 488
           G ++ +
Sbjct: 208 GFVERV 213


>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 409

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 248 NRLIRLPSPRTSMGASSSSPNLFDSKS 168
           ++++R+PSP +S   SSSSP    S S
Sbjct: 46  SKILRIPSPTSSPPPSSSSPPFHGSNS 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,757
Number of Sequences: 28952
Number of extensions: 316876
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)