Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00160
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   1.9  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   7.7  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 17  TAIEGEDTSVPPSH 58
           T+IEG  TS+PPSH
Sbjct: 247 TSIEGAKTSIPPSH 260


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 321 KSLKWHTYFSYLIALRGYFSSPYI*TSSRGSNRGVAN 211
           K L   TYF + +A++ +FS P +  SS G   G  N
Sbjct: 287 KKLAKDTYFVFFMAIKIFFSEPIV--SSLGIYNGFVN 321


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 364 C*QYCIFRIVQLAQSVLTRLGYC*Y 438
           C   C+F++  LA   L R GY  Y
Sbjct: 457 CVDRCLFQLASLAYEFLVRYGYINY 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,058
Number of Sequences: 5004
Number of extensions: 36171
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)