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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00160
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)              28   4.6  

>SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 139 GKKLSGLCLWVNSFVEPFSQATGST 65
           G  + G+CLWV S +E F Q  GST
Sbjct: 14  GSSVPGMCLWVVSIIE-FLQPGGST 37


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 133 KLSGLCLWVNSFVEPF 86
           K S LC+W+NSF+ P+
Sbjct: 891 KYSHLCIWLNSFLNPY 906


>SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 275 EAISVRPTSRQAHGAQTGVLLTLALARAVFAESTTGSETR-PTEKMRQE 132
           E+I +  TS + H A +  L T   A A  +  T G+ETR   + +R+E
Sbjct: 38  ESIPMTSTSSRTHAAHSMALQTAGTASAETSVITEGAETRLGLQSLREE 86


>SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)
          Length = 392

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 551 VVEIPLDADDPGYV-ESLEGIFINAIIKLSSFPLYLQME 438
           VV+I  D  DP  V E  E IF+N   + + FPL L ME
Sbjct: 162 VVDIDADKTDPFQVAEYAEEIFLNMKRRENLFPLELYME 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,597,407
Number of Sequences: 59808
Number of extensions: 271701
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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