BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00160 (568 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6 SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6 SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23) 28 4.6 >SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 150 Score = 28.7 bits (61), Expect = 3.5 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 139 GKKLSGLCLWVNSFVEPFSQATGST 65 G + G+CLWV S +E F Q GST Sbjct: 14 GSSVPGMCLWVVSIIE-FLQPGGST 37 >SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 966 Score = 28.3 bits (60), Expect = 4.6 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = -1 Query: 133 KLSGLCLWVNSFVEPF 86 K S LC+W+NSF+ P+ Sbjct: 891 KYSHLCIWLNSFLNPY 906 >SB_23351| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 580 Score = 28.3 bits (60), Expect = 4.6 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -3 Query: 275 EAISVRPTSRQAHGAQTGVLLTLALARAVFAESTTGSETR-PTEKMRQE 132 E+I + TS + H A + L T A A + T G+ETR + +R+E Sbjct: 38 ESIPMTSTSSRTHAAHSMALQTAGTASAETSVITEGAETRLGLQSLREE 86 >SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23) Length = 392 Score = 28.3 bits (60), Expect = 4.6 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -3 Query: 551 VVEIPLDADDPGYV-ESLEGIFINAIIKLSSFPLYLQME 438 VV+I D DP V E E IF+N + + FPL L ME Sbjct: 162 VVDIDADKTDPFQVAEYAEEIFLNMKRRENLFPLELYME 200 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,597,407 Number of Sequences: 59808 Number of extensions: 271701 Number of successful extensions: 531 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 531 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1337207630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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