Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00160
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    28   4.1  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    28   4.1  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    28   4.1  

>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 179 STTGSETRPTEKMRQETQWAVSVG*F--VRRALLASDGFDEDGDWVAHWYLLLLLQFK 12
           STT S T PT       +  + +     +R+  L   G   D DW  HW +L  LQ K
Sbjct: 263 STTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLMLRG-KSDNDWCKHWVVLAGLQLK 319


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 179 STTGSETRPTEKMRQETQWAVSVG*F--VRRALLASDGFDEDGDWVAHWYLLLLLQFK 12
           STT S T PT       +  + +     +R+  L   G   D DW  HW +L  LQ K
Sbjct: 263 STTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLMLRG-KSDNDWCKHWVVLAGLQLK 319


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 179 STTGSETRPTEKMRQETQWAVSVG*F--VRRALLASDGFDEDGDWVAHWYLLLLLQFK 12
           STT S T PT       +  + +     +R+  L   G   D DW  HW +L  LQ K
Sbjct: 263 STTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLMLRG-KSDNDWCKHWVVLAGLQLK 319


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -3

Query: 179 STTGSETRPTEKMRQETQWAVSVG*F--VRRALLASDGFDEDGDWVAHWYLLLLLQFK 12
           STT S T PT       +  + +     +R+  L   G   D DW  HW +L  LQ K
Sbjct: 263 STTNSATTPTISTTPTQKLNIDMSNVHTLRKGWLMLRG-KSDNDWCKHWVVLAGLQLK 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,429,886
Number of Sequences: 27780
Number of extensions: 201577
Number of successful extensions: 408
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)