Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00159
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    52   7e-08
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    38   0.002
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    35   0.011
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    32   0.10 
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    31   0.24 
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   2.2  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    26   6.8  
SPAC750.07c |||S. pombe specific GPI anchored protein family 1|S...    26   6.8  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    26   6.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   9.0  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 30/73 (41%), Positives = 39/73 (53%)
 Frame = +1

Query: 250 LISLPTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQL 429
           L  LP EIG LKNLV L+ S N +  + PE+G L +L         +  IP E+G L QL
Sbjct: 193 LTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQL 252

Query: 430 DTFGARGNELKTI 468
              G  GN L+ +
Sbjct: 253 KILGIEGNPLQDV 265



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%)
 Frame = +1

Query: 250 LISLPTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQL 429
           L ++ T++     L  L +++N L  L PEIG L+ L     +   +K IP E+G LT+L
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTEL 229

Query: 430 DTFGARGNELKTIPEEMTSLAKLRWLSL 513
                  N +  IP E+ +L +L+ L +
Sbjct: 230 REVLLFDNMISVIPAELGTLFQLKILGI 257



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 29  FIRENHILALIEQAIAKKKSRLSLN--GFEITEIPGLLYTCLEVEHLYLHKNKISVFPVE 202
           +I  N++  L  + I K K+ + L+  G  I  IP  L    E+  + L  N ISV P E
Sbjct: 187 YINHNNLTRLPPE-IGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAE 245


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +1

Query: 271 IGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARG 450
           I  L N+  + ++YN    +   I  ++ L+   C    +  +   +GKL  L       
Sbjct: 679 IETLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHA 738

Query: 451 NELKTIPEEMTSLAKLRWLSL 513
           N +K  PEE+  ++ L+ ++L
Sbjct: 739 NNIKIFPEEVWQVSSLKVVNL 759



 Score = 31.1 bits (67), Expect = 0.18
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 259 LPTEIGNLKNLVNLNLSYNPLNVLIPEIGDLEKLEAF--WCNRIGLKE 396
           LP EIG LKNL  ++LSYN +   I  + +  KL +    CN +   E
Sbjct: 587 LPQEIGLLKNLETIDLSYNAI-TNIASLSECPKLNSINVACNLLSFYE 633



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 32  IRENHILALIEQAIAKKKSR-LSLNGFEITEIPGLLYTCLEVEHLYLHKNKISVFPVE 202
           +  NH  ++ +   A +  + LS    E++ +   L     + HL LH N I +FP E
Sbjct: 690 VNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEE 747


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +1

Query: 289 LVNLNLSYNPLNVLIPEIGDLEKLEAFWCNRIGLKEIPKEIGKLTQLDTFGARGNELKTI 468
           +  L L +N +  + PEI    +L         L+E P+ + +L  L+      N++K +
Sbjct: 54  IARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQL 113

Query: 469 PEEMTSLAKLRWLSL 513
           PE   +L  L+ LS+
Sbjct: 114 PESFGALMNLKVLSI 128



 Score = 30.7 bits (66), Expect = 0.24
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 495 IEMVELENNQIETLPDTMDRMTALVHCNLRNNRLEQFPSSILQCKELMFLPFE 653
           +E++++  N+I+ LP++   +  L   ++  NRL + P+ I     L  L  E
Sbjct: 100 LEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIE 152



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 495 IEMVELENNQIETLPDTMDRMTALVHCNLRNNRLEQFPSSILQCKELMFL 644
           I  + L +N I+++   + + T L + N+R+N L +FP S+ + + L  L
Sbjct: 54  IARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEIL 103


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 373 CNRIGLKEIPKEIG-KLTQLDTFGARGNELKTIPEEMTSLAKLRWLSLRIIKSKHCQT 543
           C+   LK IPK +   L  L +    GNEL  IP  +  L +L  L+L   K   C+T
Sbjct: 339 CSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +1

Query: 271 IGNLKNLVNLNLSYNPLNVLIPEIGDLEKLE--AFWCNRIGLKEIPKEIGKLTQLDTFGA 444
           + N+KNL  L+LS+N +   I  I  L+ LE   F  NRI   E  + + +LT L+    
Sbjct: 100 LDNVKNLTYLDLSFNNIKT-IRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLE---L 155

Query: 445 RGNELKTIPEEMTSLAKLRWL 507
            GN+++ I E + +L  L  L
Sbjct: 156 GGNKIRVI-ENLDTLVNLEKL 175


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 364 AFWCNRIGLKEIPKEIGKLTQLD 432
           AF+C R+G+ E+P+ +   + +D
Sbjct: 915 AFFCQRLGINELPQSVAFFSSVD 937


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 708 AGYETRV*ISWY*GNLITIQMGGT-SALYIGVSMTETVLACCYVNYNG 568
           +G  T   ++W  G LI   +G      Y G  M  T++A C+  YNG
Sbjct: 15  SGLATAFYVTWQ-GRLICAGVGLILEQAYEGGQMFNTLMAHCFETYNG 61


>SPAC750.07c |||S. pombe specific GPI anchored protein family
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 708 AGYETRV*ISWY*GNLITIQMGGT-SALYIGVSMTETVLACCYVNYNG 568
           +G  T   ++W  G LI   +G      Y G  M  T++A C+  YNG
Sbjct: 15  SGLATAFYVTWQ-GRLICAGVGLILEQAYEGGQMFNTLMAHCFETYNG 61


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 376 NRIGLKEIPKEIGKLTQLDTFGARGNELKTIPE--EMTSLA 492
           N I L     EIG +  L+TF + G +  T PE  E+  LA
Sbjct: 306 NAIPLSAQNSEIGHVNPLETFTSNGRKRLTSPEIWELQQLA 346


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 413 PISLGISFKPILLHQNASSFSRSPISG 333
           P +LGI F P+LL  +++  S+S  SG
Sbjct: 489 PEALGIIFGPLLLGNSSTDLSKSCPSG 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,410
Number of Sequences: 5004
Number of extensions: 56888
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)